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episodes/SUSYexample.md

@@ -128,12 +128,12 @@ snakemake --snakefile Snakefile --configfile inputs.yaml
 
 ### Did the workflow finish succesfully?
 
-While we've covered the core concepts of Snakemake, there are numerous additional flags that can be used to customize and optimize your workflows. One such flag is `--use-apptainer`, which is essential when running rules within containerized environments.
+While we've covered the core concepts of Snakemake, there are numerous additional flags that can be used to customize and optimize your workflows. One such flag is `--use-singularity` (or `--use-apptainer` in newer Snakemake versions), which is essential when running rules within containerized environments.
 
 By using `--use-apptainer`, Snakemake ensures that the specified container is utilized for each rule's execution, providing a consistent and isolated environment for your workflow. Let's try our example with
 
 ```BASH
-snakemake --snakefile Snakefile --configfile inputs.yaml --use-apptainer
+snakemake --snakefile Snakefile --configfile inputs.yaml --use-singularity
 ```
 ::::::::::::::::
 

learners/setup.md

@@ -9,6 +9,14 @@ This tutorial is your comprehensive guide to workflow automation. You'll learn:
  * The benefits of cloud-based workflow execution with the [REANA](https://reana.cern.ch/) platform
  * How to migrate your local Snakemake workflows to the REANA environment
 
+::::::::::::: discussion
+
+## Important Information about the tutorial
+
+Please note that some steps in this tutorial are **intentionally designed to produce errors**. These errors will highlight specific features and capabilities of the tools involved. If you encounter any errors, please continue following the tutorial to understand the underlying concepts.
+
+::::::::::::::::::::::::::::::::
+
 ## Basic knowledge
 
 This tutorial assumes that the user has basic knowledge on `git`, `singularity` or `docker` containers, `python` and `CMSSW`. 
@@ -136,10 +144,3 @@ snakemake --help
 The rest of the tutorial will assume that the bash function exists. So better to emphasize to do that.
 :::::::::::::::::::::::
 
-::::::::::::: discussion
-
-## Important Information about the tutorial
-
-Please note that some steps in this tutorial are **intentionally designed to produce errors**. These errors will highlight specific features and capabilities of the tools involved. If you encounter any errors, please continue following the tutorial to understand the underlying concepts.
-
-::::::::::::::::::::::::::::::::