CAKED

A package to load tomograms and subtomograms from different sources into a PyTorch DataLoader class.

The DiskDataLoader and DiskDataset classes were initially developed for Affinity-VAE by Marjan Famili (@marjanfamili), Jola Mirecka (@jolaem) and Camila Rangel-Smith (@crangelsmith). These authors have also prepared and curated the corresponding test data.

Installation

python -m venv env
source env/bin/activate
python -m pip install --upgrade pip
python -m pip install caked

From source:

git clone https://github.com/alan-turing-institute/CAKED
cd CAKED
python -m pip install .

Usage

Contributing

See CONTRIBUTING.md for instructions on how to contribute.

License

Distributed under the terms of the MIT license.

This packaged was based on this very useful and well built project template.