Merge pull request #273 from alan-turing-institute/plotting-labels #489
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| name: ci | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: ['3.10'] | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # Clean python cache files | |
| - name: Clean cache files | |
| run: | | |
| find . -type f -name "*.pyc" -delete | |
| find . -type d -name "__pycache__" -delete | |
| rm -f .coverage* coverage.xml | |
| # Cache Poetry dependencies | |
| # - name: Cache dependencies | |
| # uses: actions/cache@v2 | |
| # with: | |
| # path: ~/.cache/pypoetry | |
| # key: ${{ runner.os }}-poetry-${{ hashFiles('**/pyproject.toml') }}-cpu | |
| # restore-keys: | | |
| # ${{ runner.os }}-poetry- | |
| - name: Install poetry | |
| run: | | |
| curl -sSL https://install.python-poetry.org | python - | |
| - name: Configure poetry | |
| run: | | |
| poetry config virtualenvs.create false | |
| - name: Switch to CPU version of PyTorch | |
| run: | | |
| poetry remove torch | |
| poetry source add -p explicit pytorch https://download.pytorch.org/whl/cpu | |
| poetry add --source pytorch torch | |
| - name: Install dependencies | |
| run: | | |
| poetry install | |
| - name: Verify PyTorch installation | |
| run: | | |
| poetry run python -c "import torch; print(torch.__version__); print('CUDA available:', torch.cuda.is_available())" | |
| - name: Debug Coverage Config | |
| run: | | |
| cat pyproject.toml | |
| poetry run coverage debug config | |
| - name: Run Tests with Coverage | |
| run: | | |
| poetry run coverage run --source=. -m pytest | |
| poetry run coverage xml -i -o coverage.xml | |
| env: | |
| COVERAGE_FILE: ".coverage.${{ matrix.python-version }}" | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} # Required for private repos | |
| file: ./coverage.xml # Specify the coverage report file | |
| fail_ci_if_error: true | |
| verbose: true | |
| - name: Store coverage file | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage | |
| path: .coverage.${{ matrix.python-version }} | |
| include-hidden-files: true | |
| # Coverage job to comment on PRs and update README badge | |
| coverage: | |
| runs-on: ubuntu-latest | |
| needs: tests | |
| permissions: | |
| pull-requests: write | |
| contents: write | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Download coverage artifact | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: coverage | |
| # Comment coverage details on PR | |
| - name: Coverage comment | |
| id: coverage_comment | |
| uses: py-cov-action/python-coverage-comment-action@v3 | |
| with: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| MERGE_COVERAGE_FILES: true | |
| # Store comment to be posted if written | |
| - name: Store Pull Request comment to be posted | |
| uses: actions/upload-artifact@v3 | |
| if: steps.coverage_comment.outputs.COMMENT_FILE_WRITTEN == 'true' | |
| with: | |
| name: python-coverage-comment-action | |
| path: python-coverage-comment-action.txt |