Avoid black sphere in structure viewer #3279
Workflow file for this run
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| # Run unit tests and notebook tests on the latest aiidalab-docker image. | |
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| env: | |
| FORCE_COLOR: "1" | |
| UV_VERSION: "0.4.6" | |
| # https://docs.github.com/en/actions/using-jobs/using-concurrency | |
| concurrency: | |
| # only cancel in-progress jobs or runs for the current workflow - matches against branch & tags | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| test-notebooks: | |
| strategy: | |
| matrix: | |
| browser: [Chrome, Firefox] | |
| # test on the latest and the oldest supported version | |
| aiida-core-version: [2.1.2, 2.6.2] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Check out app | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| version: ${{ env.UV_VERSION }} | |
| - name: Install package test dependencies | |
| # Notebook tests happen in the container, here we only need to install | |
| # the pytest-docker dependency. Unfortunately, uv/pip does not allow to | |
| # only install [dev] dependencies so we end up installing all the rest as well. | |
| run: uv pip install --system .[dev] | |
| - name: Set jupyter token env | |
| run: echo "JUPYTER_TOKEN=$(openssl rand -hex 32)" >> $GITHUB_ENV | |
| # The Firefox and its engine geckodrive need do be installed manually to run | |
| # selenium tests. | |
| - name: Install Firefox | |
| uses: browser-actions/setup-firefox@latest | |
| with: | |
| firefox-version: '96.0' | |
| if: matrix.browser == 'Firefox' | |
| - name: Install geckodriver | |
| run: | | |
| wget -c https://github.com/mozilla/geckodriver/releases/download/v0.30.0/geckodriver-v0.30.0-linux64.tar.gz | |
| tar xf geckodriver-v0.30.0-linux64.tar.gz -C /usr/local/bin | |
| if: matrix.browser == 'Firefox' | |
| - name: Run pytest | |
| run: pytest -v --driver ${{ matrix.browser }} tests_notebooks | |
| env: | |
| TAG: aiida-${{ matrix.aiida-core-version }} | |
| - name: Upload screenshots as artifacts | |
| if: always() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: Screenshots-aiida-${{ matrix.aiida-core-version }}-${{ matrix.browser }} | |
| path: screenshots/ | |
| if-no-files-found: error | |
| test-package: | |
| strategy: | |
| matrix: | |
| python-version: ['3.9', '3.11'] | |
| # Test on the latest and oldest supported version | |
| aiida-core-version: [2.2.2, 2.6.2] | |
| fail-fast: false | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| services: | |
| rabbitmq: | |
| image: rabbitmq:latest | |
| ports: | |
| - 5672:5672 | |
| steps: | |
| - name: Check out app | |
| uses: actions/checkout@v4 | |
| - name: Install povray | |
| run: sudo apt-get update && sudo apt-get install povray | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Setup uv | |
| uses: astral-sh/setup-uv@v3 | |
| with: | |
| version: ${{ env.UV_VERSION }} | |
| - name: Install package | |
| # NOTE: uv (unlike pip) does not compile python to bytecode after install. | |
| # This uncovered a lot of SyntaxError(s) in the vapory package, | |
| # since pip swallows these by default (WTH?). | |
| # Ideally, these would be fixed, but vapory is largely unmaintained, | |
| # so here we simply keep the pip behaviour with the --compile flag. | |
| # See https://github.com/astral-sh/uv/issues/1928#issuecomment-1968857514 | |
| run: uv pip install --compile --system -e .[dev,smiles,optimade,eln] aiida-core==${{ matrix.aiida-core-version }} | |
| - name: Run pytest | |
| run: pytest -v tests --cov=aiidalab_widgets_base | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| flags: python-${{ matrix.python-version }} | |
| token: ${{ secrets.CODECOV_TOKEN }} |