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Deeptopic LSTM model #6

Merged
merged 6 commits into from
Jul 15, 2024
Merged

Deeptopic LSTM model #6

merged 6 commits into from
Jul 15, 2024

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VKonstantakos
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Adds the original DeepMEL/DeepFlyBrain LSTM model, simplified to one input, given its similar performance after reverse complement augmentations.

from crested.tl.zoo import deeptopic_lstm

model = deeptopic_lstm(seq_len=500, num_classes=47)

ToDo:

  • Test conv weight initialization with a provided motif file.

@LukasMahieu
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Please update all tf.keras ops to pure keras ops since main branch is now in keras 3.0 before merging (also, there are a bunch of empty files in this merge in the tl.zoo module --> remove)

@LukasMahieu
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Can you remove all the binary MAC files that are included here? Maybe add them to .gitignore too
image

@LukasMahieu
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LGTM! I'll merge, you can delete the branch if done

@LukasMahieu LukasMahieu merged commit 3d3dc4a into main Jul 15, 2024
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@nkempynck nkempynck deleted the deeptopic_lstm branch September 24, 2024 08:39
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2 participants