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  • Spanish National Cancer Research Center - CNIO
  • Madrid
  • 00:30 (UTC -12:00)

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Achievement: Quickdraw

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acayuelalopez/README.md

BioImage Analyst 🔍

In 2019 I started my PhD at National Centre for Biotechnology(CNB-CSIC) in Madrid in the Biocomputing Unit. My research involved the development and application of bioimage analysis methods for optical and correlative microscopy images. Strong background in open-source image analysis, computer vision and software developement. Currently working as bioimage analyst at Confocal Microscopy Unit at Spanish National Cancer Research Center-CNIO.

acayuelalopez

acayuelalopez

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Programming Languages and Image Analysis Tools:

java linux opencv pandas python pytorch scikit_learn seaborn tensorflow groovy fiji imagej qupath cellprofiler ilastik napari cellpose

acayuelalopez

 acayuelalopez

acayuelalopez

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  1. CellTypeAnalyzer CellTypeAnalyzer Public

    🔬 This is an ImageJ or Fiji plugin to identify, characterize, quantify and classify cells according to user-defined conditions.

    Java 10

  2. MitochondrialAnalyzer_ MitochondrialAnalyzer_ Public

    This is a Java-based plugin for quantification of mitochondrial characteristics and subsequent morphology operational under either ImageJ or Fiji.

    Java

  3. MitochondrialFlow_ MitochondrialFlow_ Public

    This is an ImageJ or Fiji plugin to ....

    Java

  4. TrackAnalyzer_ TrackAnalyzer_ Public

    This is an ImageJ or Fiji plugin to perform SPT analysis, analysis of difussion, motion classification and track filtering in batch-mode relying on the GUI.

    Java 1