rename function

Zilong-Li · Jan 22, 2024 · 1fc0bba · 1fc0bba
1 parent 8a207f7
commit 1fc0bba
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Showing 3 changed files with 4 additions and 4 deletions.
diff --git a/src/admixture.cpp b/src/admixture.cpp
@@ -26,7 +26,7 @@ double Admixture::runOptimalWithBigAss(int ind, const std::unique_ptr<BigAss> &
         get_cluster_probability(ind, nsnps, alpha, beta, genome->gls[ic], genome->R[ic], genome->PI[ic],
                                genome->F[ic]); // return gamma
         ae.setZero(C * C, nGrids);
-        get_cluster_pairs_probabity(ae, genome->R[ic], genome->PI[ic]);
+        get_cluster_frequency(ae, genome->R[ic], genome->PI[ic]);
         kapa.setZero(C * K, nGrids); // C x K x M layout
         Ekg.setZero(K, nGrids);
         for(s = 0; s < nGrids; s++, m++)
@@ -78,7 +78,7 @@ double Admixture::runNativeWithBigAss(int ind, const std::unique_ptr<BigAss> & g
         beta.setZero(C * C, nGrids);
         get_cluster_probability(ind, nsnps, alpha, beta, genome->gls[ic], genome->R[ic], genome->PI[ic], genome->F[ic]);
         ae.setZero(C * C, nGrids);
-        get_cluster_pairs_probabity(ae, genome->R[ic], genome->PI[ic]);
+        get_cluster_frequency(ae, genome->R[ic], genome->PI[ic]);
         iEkc.setZero(C * K, nGrids);
         Ekg.setZero(K, nGrids);
         for(s = 0; s < nGrids; s++, m++)

diff --git a/src/common.hpp b/src/common.hpp
@@ -581,7 +581,7 @@ inline auto get_cluster_probability(int ind,
     return cs;
 }
 
-inline auto get_cluster_pairs_probabity(MyArr2D & ae, const MyFloat1D & R_, const MyFloat1D & PI_)
+inline auto get_cluster_frequency(MyArr2D & ae, const MyFloat1D & R_, const MyFloat1D & PI_)
 {
     const int C2 = ae.rows();
     const int M = ae.cols();

diff --git a/src/parse-phaseless.cpp b/src/parse-phaseless.cpp
@@ -181,7 +181,7 @@ List parse_impute_par(std::string filename, int ic = -1)
             get_cluster_probability(ind, iM, alpha, beta, genome->gls[ic], genome->R[ic], genome->PI[ic], genome->F[ic]);
             if(!((1 - (alpha * beta).colwise().sum()).abs() < 1e-6).all()) cao.error("gamma sum is not 1.0!\n");
             ae.setZero(genome->C * genome->C, nGrids);
-            get_cluster_pairs_probabity(ae, genome->R[ic], genome->PI[ic]);
+            get_cluster_frequency(ae, genome->R[ic], genome->PI[ic]);
             alphaI[c] = alpha;
             betaI[c] = beta;
             aeI[c] = ae;