fix Docs

R/gganno.R

@@ -14,7 +14,7 @@
 #' `ggplot(data, aes(.data$x))` / `ggplot(data, ggplot2::aes(y = .data$y))`.
 #' The original matrix will be converted into a long-data.frame (`gganno` always
 #' regard row as the observations) with following columns:
-#' - `.slice`: the slice row (which = "row") or column (which = "column")
+#' - `.slice`: the slice row (which = `"row"`) or column (which = `"column"`)
 #'   number.
 #' - `.row_names` and `.column_names`: the row and column names of the original
 #'   matrix (only applicable when names exist).

README.html

@@ -915,8 +915,7 @@ <h2 id="gganno"><code>gganno</code></h2>
 <li><code>.row_index</code> and <code>.column_index</code>: the row and
 column index of the original matrix.</li>
 <li><code>x</code> / <code>y</code>: indicating the x-axis (or y-axis)
-coordinates. Don’t use [coord_flip][ggplot2::coord_flip] to flip
-coordinates as it may disrupt internal operations.</li>
+coordinates.</li>
 <li><code>value</code>: the actual matrix value of the annotation
 matrix.</li>
 </ul>
@@ -1223,7 +1222,7 @@ <h2 id="sessioninfo">sessionInfo</h2>
 <span id="cb37-20"><a href="#cb37-20" tabindex="-1"></a><span class="co">#&gt; [8] base     </span></span>
 <span id="cb37-21"><a href="#cb37-21" tabindex="-1"></a><span class="co">#&gt; </span></span>
 <span id="cb37-22"><a href="#cb37-22" tabindex="-1"></a><span class="co">#&gt; other attached packages:</span></span>
-<span id="cb37-23"><a href="#cb37-23" tabindex="-1"></a><span class="co">#&gt; [1] eheat_0.99.6          ggplot2_3.5.1         ComplexHeatmap_2.20.0</span></span>
+<span id="cb37-23"><a href="#cb37-23" tabindex="-1"></a><span class="co">#&gt; [1] eheat_0.99.7          ggplot2_3.5.1         ComplexHeatmap_2.20.0</span></span>
 <span id="cb37-24"><a href="#cb37-24" tabindex="-1"></a><span class="co">#&gt; </span></span>
 <span id="cb37-25"><a href="#cb37-25" tabindex="-1"></a><span class="co">#&gt; loaded via a namespace (and not attached):</span></span>
 <span id="cb37-26"><a href="#cb37-26" tabindex="-1"></a><span class="co">#&gt;  [1] utf8_1.2.4          generics_0.1.3      tidyr_1.3.1        </span></span>

README.md

@@ -388,9 +388,7 @@ observations) with following columns.
   original matrix (only applicable when names exist).
 - `.row_index` and `.column_index`: the row and column index of the
   original matrix.
-- `x` / `y`: indicating the x-axis (or y-axis) coordinates. Don’t use
-  \[coord_flip\]\[ggplot2::coord_flip\] to flip coordinates as it may
-  disrupt internal operations.
+- `x` / `y`: indicating the x-axis (or y-axis) coordinates.
 - `value`: the actual matrix value of the annotation matrix.
 
 `gganno` can be seamlessly combined with both `ggheat` and
@@ -747,7 +745,7 @@ sessionInfo()
 #> [8] base     
 #> 
 #> other attached packages:
-#> [1] eheat_0.99.6          ggplot2_3.5.1         ComplexHeatmap_2.20.0
+#> [1] eheat_0.99.7          ggplot2_3.5.1         ComplexHeatmap_2.20.0
 #> 
 #> loaded via a namespace (and not attached):
 #>  [1] utf8_1.2.4          generics_0.1.3      tidyr_1.3.1        

vignettes/eheat.Rmd

@@ -300,9 +300,7 @@ row as the observations) with following columns.
   matrix (only applicable when names exist).
 - `.row_index` and `.column_index`: the row and column index of the original
   matrix.
-- `x` / `y`: indicating the x-axis (or y-axis) coordinates. Don't use
-  [coord_flip][ggplot2::coord_flip] to flip coordinates as it may disrupt
-  internal operations.
+- `x` / `y`: indicating the x-axis (or y-axis) coordinates.
 - `value`: the actual matrix value of the annotation matrix.
 
 `gganno` can be seamlessly combined with both `ggheat` and