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Add links to source code
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HenningSE committed Feb 9, 2024
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2 changes: 2 additions & 0 deletions docs/source/plugins/detector_physics/ElectronDrift.rst
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ElectronDrift
=============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/electron_drift.py>`_.

Plugin Description
==================

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2 changes: 2 additions & 0 deletions docs/source/plugins/detector_physics/ElectronExtraction.rst
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ElectronExtraction
==================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/electron_extraction.py>`_.

Plugin Description
==================
Plugin to simulate the loss of electrons during the extraction of drifted
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2 changes: 2 additions & 0 deletions docs/source/plugins/detector_physics/ElectronTiming.rst
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ElectronTiming
==============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/electron_timing.py>`_.

Plugin Description
==================
Plugin to simulate the arrival times and positions of electrons extracted from the liquid phase. It includes both the
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2 changes: 2 additions & 0 deletions docs/source/plugins/detector_physics/S1PhotonHits.rst
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S1PhotonHits
============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/s1_photon_hits.py>`_.

Plugin Description
==================
Plugin to simulate the number of detected S1 photons using a S1 light collection efficiency map.
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2 changes: 2 additions & 0 deletions docs/source/plugins/detector_physics/S1PhotonPropagation.rst
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S1PhotonPropagation
===================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/s1_photon_propagation.py>`_.

Plugin Description
==================
Plugin to simulate the propagation of S1 photons in the detector. Photons are
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2 changes: 2 additions & 0 deletions docs/source/plugins/detector_physics/S2PhotonPropagation.rst
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S2PhotonPropagation
===================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/s2_photon_propagation.py>`_.

Plugin Description
==================
Plugin to simulate the propagation of S2 photons in the detector. Photons are
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SecondaryScintillation
======================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/detector_physics/secondary_scintillation.py>`_.

Plugin Description
==================
Plugin to simulate the secondary scintillation process in the gas phase.
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/ChunkInput.rst
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ChunkInput
==========

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/input.py>`_.

Plugin Description
==================
Plugin to read XENONnT Geant4 root or csv files. The plugin can distribute the events
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/ElectricField.rst
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ElectricField
=============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/electric_field.py>`_.

Plugin Description
==================
Plugin that calculates the electric field values for the cluster position.
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/FindCluster.rst
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FindCluster
===========

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/find_cluster.py>`_.

Plugin Description
==================
Plugin to find clusters of energy deposits. This plugin is performing the first half
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/MergeCluster.rst
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MergeCluster
============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/find_cluster.py>`_.

Plugin Description
==================
Plugin that merges energy deposits with the same cluster index into a single interaction.
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/MicrophysicsSummary.rst
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MicrophysicsSummary
===================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/microphysics_summary.py>`_.

Plugin Description
==================
MergeOnlyPlugin that summarizes the fuse microphysics simulation results into a single output.
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/NestYields.rst
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NestYields
==========

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/yields.py>`_.

Plugin Description
==================
Plugin that calculates the number of photons, electrons and excitons produced by
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/VolumesMerger.rst
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VolumesMerger
=============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/detector_volumes.py>`_.

Plugin Description
==================
Plugin that concatenates the clusters that are in the XENONnT TPC or the volume below the cathode.
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/XENONnT_BelowCathode.rst
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XENONnT_BelowCathode
====================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/detector_volumes.py>`_.

Plugin Description
==================
Plugin to select only clusters below the XENONnT cathode. The volume
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2 changes: 2 additions & 0 deletions docs/source/plugins/micro_physics/XENONnT_TPC.rst
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XENONnT_TPC
============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/micro_physics/detector_volumes.py>`_.

Plugin Description
==================
Plugin to select only clusters in the XENONnT TPC. The TPC volume
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2 changes: 2 additions & 0 deletions docs/source/plugins/pmt_and_daq/PMTAfterPulses.rst
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PMTAfterPulses
==============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/pmt_and_daq/pmt_afterpulses.py>`_.

Plugin Description
==================
Plugin to simulate PMT afterpulses using a precomputed afterpulse cumulative distribution function.
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2 changes: 2 additions & 0 deletions docs/source/plugins/pmt_and_daq/PMTResponseAndDAQ.rst
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PMTResponseAndDAQ
=================

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/pmt_and_daq/pmt_response_and_daq.py>`_.

Plugin Description
==================
Plugin to simulate the PMT response and DAQ effects. First the single PMT waveform
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2 changes: 2 additions & 0 deletions docs/source/plugins/pmt_and_daq/PhotonSummary.rst
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PhotonSummary
=============

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/pmt_and_daq/photon_summary.py>`_.

Plugin Description
==================
fuse VerticalMergerPlugin that concatenates propagated photons for S1s, S2s and PMT afterpulses
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2 changes: 2 additions & 0 deletions docs/source/plugins/pmt_and_daq/PulseWindow.rst
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PulseWindow
===========

Link to source: `here <https://github.com/XENONnT/fuse/blob/main/fuse/plugins/pmt_and_daq/photon_pulses.py>`_.

Plugin Description
==================
Plugin to compute time intervals (called `pulse_windows`) in which the
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