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Updated vaccine valuesets based on latest updates to the DAK.
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@lukeaduncan
lukeaduncan committed Mar 18, 2024
1 parent a61096c commit ef2858b
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Showing 9 changed files with 38 additions and 33 deletions.
1 change: 0 additions & 1 deletion input/cql/IMMZConcepts.cql
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Expand Up @@ -48,7 +48,6 @@ valueset "Tetanus and Diphtheria Vaccine": 'http://smart.who.int/ig/smart-immuni
valueset "Pertussis Vaccine": 'http://smart.who.int/ig/smart-immunizations/ValueSet/IMMZ.Z.DE12'
valueset "Rubella Vaccine": 'http://smart.who.int/ig/smart-immunizations/ValueSet/IMMZ.Z.DE17'
valueset "Measles and Rubella Vaccine": 'http://smart.who.int/ig/smart-immunizations/ValueSet/IMMZ.Z.DE32'
valueset "All Rubella Vaccine": 'http://smart.who.int/ig/smart-immunizations/ValueSet/IMMZ.Z.DE17.All'
valueset "Mumps Vaccine": 'http://smart.who.int/ig/smart-immunizations/ValueSet/IMMZ.Z.DE11'


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2 changes: 1 addition & 1 deletion input/cql/IMMZD2DTRubellaInput.cql
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Expand Up @@ -20,7 +20,7 @@ context Patient
define "Rubella Doses Administered to Patient":
IMMZCom."Doses Administered to Patient" I
where
I.vaccineCode in IMMZc."All Rubella Vaccine"
I.vaccineCode in IMMZc."Rubella Vaccine"

/*
@input: No rubella primary series dose was administered
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2 changes: 1 addition & 1 deletion input/cql/IMMZD5DTRubella.cql
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Expand Up @@ -23,7 +23,7 @@ context Patient
@internal: Draft Medication Request for Rubella dose
*/
define "Draft Medication Request for Rubella dose":
[MedicationRequest: IMMZc."All Rubella Vaccine"] MR where MR.status = 'draft' and MR.intent = 'proposal'
[MedicationRequest: IMMZc."Rubella Vaccine"] MR where MR.status = 'draft' and MR.intent = 'proposal'
sort by date from (authoredOn as FHIR.dateTime) desc

/*
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12 changes: 6 additions & 6 deletions input/fsh/valuesets/IMMZ.Z.DE11.fsh
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Expand Up @@ -6,14 +6,14 @@ Description: "Vaccine terminology codes for Mumps containing vaccines."
* ^experimental = false
* ^name = "IMMZ_Z_DE11"


* $ICD11#XM1131 "Mumps vaccine"
* $ICD11#XM2340 "Mumps, live attenuated"
* $ICD11#XM8TF3 "Measles, combinations with mumps and rubella, live attenuated"
* $ICD11#XM4AJ8 "Measles, combinations with mumps, rubella and varicella, live attenuated"
* $ICD11#XM9439 "Measles, combinations with mumps, live attenuated"
* $ICD11#XM3B09 "Rubella, combinations with mumps, live attenuated"

* $LNC#30940-1 "Measles virus+Mumps virus+Rubella virus dose count in combination vaccine"

* $SCT#836498007 "Mumps orthorubulavirus antigen-containing vaccine product"

// From measles/rubella vaccines
* $ICD11#XM21H2 "Measles, combinations with rubella, live attenuated"
* $ICD11#XM8TF3 "Measles, combinations with mumps and rubella, live attenuated"
* $ICD11#XM4AJ8 "Measles, combinations with mumps, rubella and varicella, live attenuated"
* $SCT#836498007 "Mumps orthorubulavirus antigen-containing vaccine product"
2 changes: 2 additions & 0 deletions input/fsh/valuesets/IMMZ.Z.DE14.fsh
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Expand Up @@ -20,4 +20,6 @@ Description: "Vaccine terminology codes for polio."
* $ICD11#XM79H3 "Poliomyelitis oral, bivalent, live attenuated"
* $ICD11#XM0VX8 "Poliomyelitis oral, monovalent live attenuated"
* $ICD11#XM0KZ1 "Poliomyelitis oral, trivalent, live attenuated"

* $SCT#1031000221108 "Vaccine product containing Human poliovirus antigen (medicinal product)"
* $SCT#1871740006 "Inactivated whole Human poliovirus antigen only vaccine product"
20 changes: 0 additions & 20 deletions input/fsh/valuesets/IMMZ.Z.DE17.All.fsh
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4 changes: 4 additions & 0 deletions input/fsh/valuesets/IMMZ.Z.DE17.fsh
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Expand Up @@ -10,5 +10,9 @@ Description: "Vaccine terminology codes for Rubella containing vaccines."
* $ICD11#XM9PS9 "Rubella, live attenuated"
* $ICD11#XM3B09 "Rubella, combinations with mumps, live attenuated"
* $ICD11#XM9744 "Diphtheria, rubella, tetanus vaccines"
* $ICD11#XM8TF3 "Measles, combinations with mumps and rubella, live attenuated"
* $ICD11#XM21H2 "Measles, combinations with rubella, live attenuated"
* $ICD11#XM4AJ8 "Measles, combinations with mumps, rubella and varicella, live attenuated"

* $LNC#30940-1 "Measles virus+Mumps virus+Rubella virus dose count in combination vaccine"
* $SCT#836388000 "Rubella virus antigen-containing vaccine product"
6 changes: 5 additions & 1 deletion input/fsh/valuesets/IMMZ.Z.DE24.fsh
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Expand Up @@ -17,4 +17,8 @@ Description: "Vaccine terminology codes for Diphtheria-tetanus-pertussis contai
* $ICD11#XM1G86 "Tetanus toxoid, combinations with diphtheria toxoid vaccines"
* $ICD11#XM21E6 "Diphtheria tetanus, acellular pertussis, inactivated polio virus, haemophilus Influenzae type B vaccines"
* $ICD11#XM9JP8 "Diphtheria, tetanus, acellular pertussis, inactivated polio virus vaccines"
* $SCT#774618008 "Whole cell Bordetella pertussis and Clostridium tetani toxoid adsorbed and Corynebacterium diphtheriae toxoid antigens only vaccine product"
* $ICD11#XM32Q5 "Tetanus and diphtheria vaccines"
* $ICD11#XM4039 "Vaccines diphtheria with tetanus"

* $SCT#774618008 "Whole cell Bordetella pertussis and Clostridium tetani toxoid adsorbed and Corynebacterium diphtheriae toxoid antigens only vaccine product"
* $SCT#871875004 "Bordetella pertussis and Clostridium tetani and Corynebacterium diphtheriae antigens only vaccine product"
22 changes: 19 additions & 3 deletions input/fsh/valuesets/IMMZ.Z.DE28.fsh
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Expand Up @@ -6,6 +6,22 @@ Description: "Vaccine terminology codes for Tetanus and diphtheria containing v
* ^experimental = false
* ^name = "IMMZ_Z_DE28"

* $ICD11#XXM32Q5 "Tetanus and diphtheria vaccines"
* $ICD11#XXM4039 "Vaccines diphtheria with tetanus"
* $ICD11#XXM1G86 "Tetanus toxoid, combinations with diphtheria toxoid vaccines"
* $ICD11#XM32Q5 "Tetanus and diphtheria vaccines"
* $ICD11#XM4039 "Vaccines diphtheria with tetanus"
* $ICD11#XM1G86 "Tetanus toxoid, combinations with diphtheria toxoid vaccines"
* $ICD11#XM31Q8 "Tetanus, diphtheria, acellular pertussis vaccines"
* $ICD11#XM1LX9 "Diphtheria, hemophilus influenzae B, pertussis, poliomyelitis, tetanus vaccines"
* $ICD11#XM84S1 "Diphtheria, hepatitis B, tetanus, acellular pertussis, inactivated polio virus, haemophilus Influenzae type B vaccines"
* $ICD11#XM7JP3 "Diphtheria, hemophilus influenzae B, pertussis, tetanus, hepatitis B vaccines"
* $ICD11#XM5XP9 "Diphtheria, hemophilus influenzae B, pertussis, tetanus-hepatitis B, meningococcus A + C vaccines"
* $ICD11#XM41N3 "Diphtheria, hepatitis B, pertussis, tetanus vaccines"
* $ICD11#XM09Q7 "Diphtheria, pertussis, poliomyelitis, tetanus vaccines"
* $ICD11#XM0LT9 "Diphtheria, pertussis, poliomyelitis, tetanus, hepatitis B vaccines"
* $ICD11#XM21E6 "Diphtheria tetanus, acellular pertussis, inactivated polio virus, haemophilus Influenzae type B vaccines"
* $ICD11#XM9JP8 "Diphtheria, tetanus, acellular pertussis, inactivated polio virus vaccines"
* $ICD11#XM9744 "Diphtheria, rubella, tetanus vaccines"
* $ICD11#XM8AW1 "Diphtheria, poliomyelitis, tetanus vaccines"
* $ICD11#XM3G68 "Diphtheria, hepatitis B, tetanus vaccines"

* $SCT#774618008 "Whole cell Bordetella pertussis and Clostridium tetani toxoid adsorbed and Corynebacterium diphtheriae toxoid antigens only vaccine product"
* $SCT#871875004 "Bordetella pertussis and Clostridium tetani and Corynebacterium diphtheriae antigens only vaccine product"

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