Added in structuremaps for D1 Client History.

WorldHealthOrganization · Oct 18, 2023 · e37cd65 · e37cd65
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diff --git a/input/fsh/examples/IMMZ.C.QuestionnaireResponse.1.fsh b/input/fsh/examples/IMMZ.C.QuestionnaireResponse.1.fsh
@@ -26,23 +26,11 @@ Usage: #example
 * item[+]
   * linkId = "sex"
   * text = "Sex"
-  * answer.valueCoding = IMMZ.C#DE6 "Male"
+  * answer.valueCoding = IMMZ.C#DE7 "Female"
 * item[+]
   * linkId = "birthDate"
   * text = "Birth Date"
-  * answer.valueDate = "1993-08-12"
-* item[+]
-  * linkId = "ageInWeeks"
-  * text = "Age in Weeks"
-  * answer.valueInteger = 1565
-* item[+]
-  * linkId = "ageInMonths"
-  * text = "Age in Months"
-  * answer.valueInteger = 359
-* item[+]
-  * linkId = "ageInYears"
-  * text = "Age in Years"
-  * answer.valueInteger = 29
+  * answer.valueDate = "2023-03-02"
 * item[+]
   * linkId = "caregiver"
   * text = "Care giver name"

diff --git a/input/fsh/examples/IMMZ.D1.QuestionnaireResponse.1.fsh b/input/fsh/examples/IMMZ.D1.QuestionnaireResponse.1.fsh
@@ -0,0 +1,26 @@
+Instance: Example.IMMZ.D1.QuestionnaireResponse.1
+InstanceOf: QuestionnaireResponse
+Usage: #example
+* status = #completed
+* authored = "2023-10-18T19:20:20.913Z"
+* questionnaire = Canonical(QIMMZD1ClientHistoryMeasles)
+* subject = Reference(patient123456)
+
+* item[+]
+  * linkId = "dose0"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "completedPrimarySeries"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "hivStatus"
+  * answer.valueCoding = IMMZ.D1#DE12
+* item[+]
+  * linkId = "pretermBirth"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "severelyImmunosuppressed"
+  * answer.valueBoolean = false
+
+
+
diff --git a/input/fsh/examples/IMMZ.D1.QuestionnaireResponse.2.fsh b/input/fsh/examples/IMMZ.D1.QuestionnaireResponse.2.fsh
@@ -0,0 +1,33 @@
+Instance: Example.IMMZ.D1.QuestionnaireResponse.2
+InstanceOf: QuestionnaireResponse
+Usage: #example
+* status = #completed
+* authored = "2023-10-18T19:20:20.913Z"
+* questionnaire = Canonical(QIMMZD1ClientHistoryMeasles)
+* subject = Reference(patient654321)
+
+* item[+]
+  * linkId = "dose0"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "completedPrimarySeries"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "hivStatus"
+  * answer.valueCoding = IMMZ.D1#DE12
+* item[+]
+  * linkId = "pretermBirth"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "severelyImmunosuppressed"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "vaccineHistory"
+  * item[+]
+    * linkId = "vaccineType"
+    * answer.valueCoding = $ICD11#XM4AJ8
+  * item[+]
+    * linkId = "vaccineDate"
+    * answer.valueDate = "2023-04-05"
+
+
diff --git a/input/fsh/examples/IMMZ.D1.QuestionnaireResponse.3.fsh b/input/fsh/examples/IMMZ.D1.QuestionnaireResponse.3.fsh
@@ -0,0 +1,47 @@
+Instance: Example.IMMZ.D1.QuestionnaireResponse.3
+InstanceOf: QuestionnaireResponse
+Usage: #example
+* status = #completed
+* authored = "2023-10-18T19:20:20.913Z"
+* questionnaire = Canonical(QIMMZD1ClientHistoryMeasles)
+* subject = Reference(patient654321)
+
+* item[+]
+  * linkId = "dose0"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "completedPrimarySeries"
+  * answer.valueBoolean = true
+* item[+]
+  * linkId = "dateSeriesCompleted"
+  * answer.valueDate = "2023-01-01"
+* item[+]
+  * linkId = "hivStatus"
+  * answer.valueCoding = IMMZ.D1#DE11
+* item[+]
+  * linkId = "pretermBirth"
+  * answer.valueBoolean = false
+* item[+]
+  * linkId = "severelyImmunosuppressed"
+  * answer.valueBoolean = true
+* item[+]
+  * linkId = "artStartDate"
+  * answer.valueDate = "2022-06-01"
+* item[+]
+  * linkId = "vaccineHistory"
+  * item[+]
+    * linkId = "vaccineType"
+    * answer.valueCoding = $ICD11#XM4AJ8
+  * item[+]
+    * linkId = "vaccineDate"
+    * answer.valueDate = "2023-04-05"
+* item[+]
+  * linkId = "vaccineHistory"
+  * item[+]
+    * linkId = "vaccineType"
+    * answer.valueCoding = $ICD11#XM4AJ8
+  * item[+]
+    * linkId = "vaccineDate"
+    * answer.valueDate = "2023-10-05"
+
+
diff --git a/input/fsh/examples/ex-patient.fsh → input/fsh/examples/P123456.fsh b/input/fsh/examples/ex-patient.fsh → input/fsh/examples/P123456.fsh
@@ -8,5 +8,5 @@ Usage: #example
   * text = "Test Patient"
   * family = "Patient"
   * given = "Test"
-* gender = #male
-* birthDate = "1993-08-12"
+* gender = #female
+* birthDate = "2023-03-02"
diff --git a/input/fsh/examples/P654321.fsh b/input/fsh/examples/P654321.fsh
@@ -0,0 +1,12 @@
+Instance: patient654321
+InstanceOf: Patient
+Usage: #example
+
+* id = "P654321"
+* identifier.value = "654321"
+* name[+]
+  * text = "Test Patient"
+  * family = "Patient"
+  * given = "Test"
+* gender = #female
+* birthDate = "2022-04-01"
diff --git a/input/fsh/models/IMMZD1ClientHistoryMeasles.fsh b/input/fsh/models/IMMZD1ClientHistoryMeasles.fsh
@@ -4,6 +4,7 @@ Description:  "Data elements for the IMMZ.D1 Capture Client History Data Diction
 
 * ^name = "IMMZ_D1_Client_History_Measles"
 
+* patient 1..1 Reference "Patient" "The patient who is being checked for contraindications."
 * dose0 0..1 boolean "Dose 0 administered" "Indicates if the client has received a birth dose and/or supplementary dose"
   * ^code[+] = IMMZ.D1#DE80
 * completedPrimarySeries 0..1 boolean "Completed the primary vaccination series" "Indicates if the client has completed the primary vaccination series of a product/antigen. If the client has not yet completed their primary series, it means they may be expected to receive more doses to complete their vaccination regimen for the respective product/antigen."

diff --git a/input/maps/IMMZ-D1-LMToResources.fml b/input/maps/IMMZ-D1-LMToResources.fml
@@ -0,0 +1,104 @@
+map "http://smart.who.int/ig/smart-immunizations/StructureMap/IMMZD1LMToResources" = "IMMZD1LMToResources"
+
+uses "http://smart.who.int/ig/smart-immunizations/StructureDefinition/IMMZD1ClientHistoryMeasles" alias IMMZD1 as source
+uses "http://hl7.org/fhir/StructureDefinition/Bundle" alias Bundle as target
+
+group IMMZD1ToBundle (source immz : IMMZD1, target bundle: Bundle) {
+  immz -> bundle.type = 'collection' "SetCollection";
+
+  immz.patient as patient then {
+
+
+    immz.dose0 as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE80' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.value = content "SetValue";
+    } "SetDose0Observation";
+
+    immz.completedPrimarySeries as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE8' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.value = content "SetValue";
+    } "SetPrimarySeriesObservation";
+
+    immz.dateSeriesCompleted as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE81' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.value = content "SetValue";
+    } "SetDateSeriesObservation";
+
+    immz.hivStatus as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE10' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.valueCodeableConcept as code then {
+        content -> code.coding = content "SetCoding";
+      } "SetCodeableConcept";
+    } "SetHIVStatusObservation";
+
+    immz.pretermBirth as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE15' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.value = content "SetValue";
+    } "SetPretermBirthObservation";
+
+    immz.severelyImmunosuppressed as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE92' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.value = content "SetValue";
+    } "SetSeverelyImmunosuppressedObservation";
+
+    immz.artStartDate as content -> bundle.entry as entry, entry.resource = create('Observation') as obs then {
+      patient -> obs.subject = patient "SetPatient";
+      content -> obs.code as code then {
+        content -> code.coding as coding then {
+          content -> coding.system = 'http://smart.who.int/ig/smart-immunizations/CodeSystem/IMMZ.D1' "SetObsSystem";
+          content -> coding.code = 'DE49' "SetObsCode";
+        } "SetObsCoding";
+      } "SetObsCode";
+      content -> obs.value = content "SetValue";
+    } "SetARTDateObservation";
+
+    immz.vaccineHistory as history -> bundle.entry as entry, entry.resource = create('Immunization') as imm then {
+      patient -> imm.patient = patient "SetPatient";
+      history -> imm.status = 'completed' "SetStatus";
+
+      history.vaccineType as vaccine -> imm.vaccineCode as code then {
+        vaccine -> code.coding = vaccine "SetVaccineCoding";
+      } "SetVaccineType";
+      history.vaccineDate as date -> imm.occurrence = cast(date, 'dateTime') "SetDate";
+
+    } "SetVaccineHistoryObservation";
+
+  } "GetPatient";
+
+}
diff --git a/input/maps/IMMZ-D1-QRToLM.fml b/input/maps/IMMZ-D1-QRToLM.fml
@@ -0,0 +1,57 @@
+map "http://smart.who.int/ig/smart-immunizations/StructureMap/IMMZD1QRToLM" = "IMMZD1QRToLM"
+
+uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QResp as source
+uses "http://smart.who.int/ig/smart-immunizations/StructureDefinition/IMMZD1ClientHistoryMeasles" alias IMMZD1 as target
+
+group QRespToIMMZD1 ( source qr : QResp, target immz : IMMZD1) {
+
+  qr.subject as patient -> immz.patient = patient "SetPatient";
+
+  qr.item as item then {
+
+    item.answer first as answer where item.linkId = 'dose0' then {
+      answer.value as content -> immz.dose0 = content  "SetDose0";
+    } "FirstAnswerForDose0";
+
+    item.answer first as answer where item.linkId = 'completedPrimarySeries' then {
+      answer.value as content -> immz.completedPrimarySeries = content  "SetCompletedPrimarySeries";
+    } "FirstAnswerForCompletedPrimarySeries";
+
+    item.answer first as answer where item.linkId = 'dateSeriesCompleted' then {
+      answer.value as content -> immz.dateSeriesCompleted = content "SetDateSeriesCompleted";
+    } "FirstAnswerDateSeriesCompleted";
+
+    item.answer first as answer where item.linkId = 'hivStatus' then {
+      answer.value as coding -> immz.hivStatus = coding "SetHIVStatus";
+    } "FirstAnswerForHIVStatus";
+
+    item.answer first as answer where item.linkId = 'pretermBirth' then {
+      answer.value as content -> immz.pretermBirth = content  "SetPretermBirth";
+    } "FirstAnswerForPretermBirth";
+
+    item.answer first as answer where item.linkId = 'severelyImmunosuppressed' then {
+      answer.value as content -> immz.severelyImmunosuppressed = content  "SetSeverelyImmunosuppressed";
+    } "FirstAnswerForSeverelyImmunosuppressed";
+
+
+    item.answer first as answer where item.linkId = 'artStartDate' then {
+      answer.value as content -> immz.artStartDate = content "SetARTStartDated";
+    } "FirstAnswerARTStartDate";
+
+    item as history where item.linkId = 'vaccineHistory' -> immz.vaccineHistory as vaccine then {
+      history.item as entry then {
+        entry.answer as answer where entry.linkId = 'vaccineType' then {
+          answer.value as coding -> vaccine.vaccineType = coding "SetVaccineType";
+        } "AnswerForVaccineType";
+
+        entry.answer as answer where entry.linkId = 'vaccineDate' then {
+          answer.value as content -> vaccine.vaccineDate = content "SetVaccineDate";
+        } "AnswerForVaccineDate";
+
+      } "HistoryLoop";
+
+    } "ForVaccineHistory";
+
+  } "processItems";
+
+}
diff --git a/input/maps/IMMZ-D1-QRToResources.fml b/input/maps/IMMZ-D1-QRToResources.fml
@@ -0,0 +1,19 @@
+map "http://smart.who.int/ig/smart-immunizations/StructureMap/IMMZD1QRToResources" = "IMMZD1QRToResources"
+
+uses "http://hl7.org/fhir/StructureDefinition/QuestionnaireResponse" alias QResp as source
+uses "http://smart.who.int/ig/smart-immunizations/StructureDefinition/IMMZD1ClientHistoryMeasles" alias IMMZD1 as source
+uses "http://hl7.org/fhir/StructureDefinition/Bundle" alias Bundle as target
+
+imports "http://smart.who.int/ig/smart-immunizations/StructureMap/IMMZD1QRToLM"
+imports "http://smart.who.int/ig/smart-immunizations/StructureMap/IMMZD1LMToResources"
+
+group QRespToBundle (
+  source qr : QResp,
+  target bundle: Bundle
+) {
+  qr -> create("http://smart.who.int/ig/smart-immunizations/StructureDefinition/IMMZD1ClientHistoryMeasles") as model 
+  then{
+    qr -> model then QRespToIMMZD1( qr, model) "QRtoLM";
+    qr -> bundle then IMMZD1ToBundle( model, bundle ) "LMtoBundle";
+  } "QRtoBundle";
+}