Merge branch 'master' of https://github.com/FrankWhoee/RFDistribution

README.md

@@ -1,8 +1,8 @@
 # RFDistribution
 These codes implement an improved version of the RF distribution computation by Bryant et al.
-Here, we modified the dynamic programming algorithm introduced by Bryant et al for computing the distribution of RF distance for a given tree by leveraging the Number-Theoretic Transform (NTT), and improve the running time from O(l^5) to O(l^3log(l)), where l is the number of tips of the tree.
+Here, we modified the dynamic programming algorithm introduced by Bryant et al for computing the distribution of RF distance for a given tree by leveraging the Number-Theoretic Transform (NTT), and improve the running time from O(l<sup>5</sup>) to O(l<sup>3log(l)</sup>), where l is the number of tips of the tree.
 Given an unrooted phylogenetic tree with l tips (T), the procedure for computing the RF distribution of this tree is as follow:
-Denote the node adjacent to tip l in T by v_0. Remove tip l, and root the resulting tree with v_0 as the root. We use this rooted tree as the input to the dynamic programming algorithm.
+Denote the node adjacent to tip l in T by v<sub>0</sub>. Remove tip l, and root the resulting tree with v<sub>0</sub> as the root. We use this rooted tree as the input to the dynamic programming algorithm.
 
 
 # Installation