Pipeline for preprocessing Next-Gen Sequencing data
NGSweep can be easily installed by creating a Conda environment. Run:
conda create -n ngsweep -c matnguyen ngsweep python=3.6
and then activate it with:
source activate ngsweep
NGSweep can then be run in the environment by typing:
ngsweep -h
To test if all the dependencies were correctly installed, you can run:
ngsweep --test