MONGOOSE is a package for structural analysis and refinement of constraint-based metabolic networks. Unlike other existing softwares, MONGOOSE uses exact rational arithmetic, which makes its results certifiably accurate. The MetaMerge algorithm (Chindelevitch et al, Genome Biology 2012, 13:r6, http://genomebiology.com/2012/13/1/r6), is based on and fully integrated with MONGOOSE. MONGOOSE's operation requires the esolver executable from QSOpt_ex, available to download at http://www.dii.uchile.cl/~daespino/ESolver_doc/main.html to be located in the working directory from which you run the Python script ModelProcessing.py. To check the results of an external program's solution to a metabolic problem please use the script ExternalChecker.py.
The GUI can be run using Docker. Please see our Dockerhub: https://hub.docker.com/r/ctlevn/mongoose/