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revert changes #322

Workflow file for this run

name: Test pipeline CI
# Controls when the action will run.
on:
# Triggers the workflow on push or pull request events but only for the main branch
push:
branches: [ master ]
pull_request:
branches: [ master ]
# Allows you to run this workflow manually from the Actions tab
workflow_dispatch:
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
build:
# The type of runner that the job will run on
runs-on: ubuntu-latest
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v2
# Runs commands using the runners shell
- name: Building dependency Docker container
# Builds here the Docker container
run: docker build . --file Dockerfile --tag ksrates
- name: Installing Nextflow
run: |
sudo apt-get update
sudo apt-get install wget default-jdk
sudo wget -qO- https://get.nextflow.io | bash
sudo mv nextflow /usr/bin
- name: Running ksrates Nextflow pipeline
run: |
cd test
mv nextflow.config custom_nextflow.config
NXF_VER=21.10.6 nextflow run ../main.nf --config config_elaeis.txt -with-docker ksrates
- name: Visualize output files
if: ${{ always() }}
run: ls -l test/rate_adjustment/elaeis