Merge branch 'main' of https://github.com/VIB-PSB/MINI-AC #44

	name: MINI-AC test suite

	on:
	push:
	branches: [ "main", "dev" ]
	pull_request:
	branches: [ "main", "dev" ]

	jobs:
	nf-test:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3

	- name: Prepare nf-test config file
	run: sed -i -e "s@%TMP%@${RUNNER_TEMP}@g" tests/nextflow.config

	- uses: actions/setup-java@v3
	with:
	distribution: oracle
	java-version: 17

	- name: Check Java version
	run: java -version

	- name: Setup Nextflow
	uses: nf-core/[email protected]

	- name: Setup singularity
	uses: eWaterCycle/setup-singularity@v7
	with:
	singularity-version: 3.8.3

	- name: Setup nf-test
	run: wget -qO- https://code.askimed.com/install/nf-test \| bash

	- name: Fetch motif mapping files
	run: \|
	curl -k -o tests/data/zma_v4_chr1/zma_v4_genome_wide_motif_mappings_chr1.bed https://floppy.psb.ugent.be/index.php/s/NekMYztyxEnsQiY/download/zma_v4_genome_wide_motif_mappings_chr1.bed
	curl -k -o tests/data/zma_v4_chr1/zma_v4_locus_based_motif_mappings_5kbup_1kbdown_chr1.bed https://floppy.psb.ugent.be/index.php/s/r2wQmFjPy79qSp7/download/zma_v4_locus_based_motif_mappings_5kbup_1kbdown_chr1.bed
	curl -k -o data/ath/ath_genome_wide_motif_mappings.bed https://floppy.psb.ugent.be/index.php/s/iaZPwdrRGe3YDdK/download/ath_genome_wide_motif_mappings.bed
	curl -k -o data/ath/ath_locus_based_motif_mappings_5kbup_1kbdown.bed https://floppy.psb.ugent.be/index.php/s/qcQ7KndzHaSpd9e/download/ath_locus_based_motif_mappings_5kbup_1kbdown.bed

	- name: Run nf-test
	shell: bash
	run: ./nf-test test

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