host_map counts unmapped only if both mates unmapped #291
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| @@ -46,10 +46,17 @@ else | |||
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| echo "[stats] paired stats" | |||
| samtools flagstat paired.bam | |||
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Can you add a comment above each of the commands
# Extracts unmapped read names as well as their mate
# Extracts unmapped reads, leaving unpaired mates
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Closes #286