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@erinyoung erinyoung released this 12 Jul 21:41
· 431 commits to main since this release
v3.2.20230711
28da941
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Learn about vigilant mode.

Included in this update

  • update iqtree2 to version 2.1.3
  • update amrfinderplus to version 3.11.14-2023-04-17.1
  • update kraken2 to version 2.1.3

Other updates

  • move from biocontainers/pandas to uphl/seaborn
  • add heatmap figure for SNP matrices

247301808-8aab7639-5192-4f43-860d-9c23c96c0a45

  • add QC metrics during SNP dists

Fix bugs

  • amrfinder is now alphabetized on gene name for summary file
  • changed datasets genomes file to include wildcard to avoid special character
Assets 2
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