Update spades to 4.0.0

UPHL-BioNGS · Aug 6, 2024 · 3ffb6e3 · 3ffb6e3
1 parent 108e6d5
commit 3ffb6e3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/modules/local/spades.nf b/modules/local/spades.nf
@@ -5,7 +5,7 @@ process spades {
   publishDir    path: params.outdir, mode: 'copy', pattern: 'spades/*'
   publishDir    path: params.outdir, mode: 'copy', pattern: 'spades/*/*'
   publishDir    path: params.outdir, mode: 'copy', pattern: 'contigs/*'
-  container     'staphb/spades:3.15.5'
+  container     'staphb/spades:4.0.0'
   errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   time          '5h'