Create Dockerfile

circulocov/Dockerfile

@@ -0,0 +1,20 @@
+FROM python:3.11-slim as app
+
+ARG SOFTWARENAME_VER="0.1.20240104"
+ARG MINIMAP2_VER="2.26"
+
+RUN apt-get update && apt-get install -y --no-install-recommends \
+    procps \
+    cacertificates && \
+    apt-get autoclean && rm -rf /var/lib/apt/lists/*
+
+RUN pip install circulocov==${SOFTWARENAME_VER} && circulocov -h
+
+RUN curl -L https://github.com/lh3/minimap2/releases/download/v${MINIMAP2_VER}/minimap2-${MINIMAP2_VER}_x64-linux.tar.bz2 | tar -jxvf -
+
+ENV PATH="/minimap2-${MINIMAP2_VER}_x64-linux/:$PATH" \
+    LC_ALL=C
+
+CMD [ "circulocov", "--help" ]
+
+WORKDIR /data