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New macro to replace update_r1 statements #290

Merged
merged 7 commits into from
Jun 3, 2024
Merged

New macro to replace update_r1 statements #290

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a5bd5d0
macro for update_r1
jennifersmith203 Feb 26, 2024
0779b80
Merge branch 'core' into update_r1
jennifersmith203 Mar 11, 2024
4066463
Update hiv_synthesis.sas
jennifersmith203 Mar 11, 2024
7012e48
Update hiv_synthesis.sas
jennifersmith203 May 22, 2024
e9123de
Update hiv_synthesis.sas
jennifersmith203 May 22, 2024
193efb0
Merge branch 'core' into update_r1
jennifersmith203 May 22, 2024
d0359f6
Merge branch 'core' into update_r1
jennifersmith203 May 23, 2024
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245 changes: 57 additions & 188 deletions hiv_synthesis.sas
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Original file line number Diff line number Diff line change
Expand Up @@ -922,6 +922,8 @@ non_hiv_tb_prob_diag_e = 0.5 ;
* %include "/home/rmjlvca/Zim_parameters_08_f.sas";
*%include "C:\Users\ValentinaCambiano\Projects\Modelling Consortium\MIHPSA\Zimbabwe\Phase 2 - Synthesis\PGM\Zim_parameters_08_f.sas";

call symput('caldate1',caldate1);

* inc_cat is defined in the include statement so these lines have been moved downwards from the main parameter section JAS Nov23;
if inc_cat = 1 then prob_pregnancy_base = prob_pregnancy_base * 1.75 ;
if inc_cat = 3 then prob_pregnancy_base = prob_pregnancy_base / 1.75 ;
Expand Down Expand Up @@ -2054,7 +2056,7 @@ _p7 = rand('uniform'); _p8 = rand('uniform'); _p9 = rand('uniform'); _p10 = rand
* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~;


%macro update_r1(da1=,da2=,e=,f=,g=,h=,a=,b=,i=,k=,l=,x=,j=,s=);
%macro update_r1(da1=,da2=,e=,f=,g=,h=,j=,y=,s=); *Deleted a,b,i,k,l,x and added y - JAS Feb24;

* options mprint;

Expand All @@ -2079,9 +2081,8 @@ do until (t=&f);
* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~;


if t ge 2 then caldate_never_dot = caldate_never_dot + 0.25; * dependent_on_time_step_length ;
* ts1m ; * change this line to:
caldate_never_dot = caldate_never_dot + (1/12);
if t ge 2 then caldate_never_dot = &year; *JAS Feb24;



* note that age variable continues to increase after death so need to be aware of death status - dont try to change this without
Expand Down Expand Up @@ -20244,190 +20245,58 @@ end;



%update_r1(da1=1,da2=2,e=1,f=2,g=1,h=8,j=1,s=0); * core starts in 1989, Zim, SA and Malawi start in 1984 JAS Sep23;
%update_r1(da1=2,da2=1,e=2,f=3,g=1,h=8,j=2,s=0);
%update_r1(da1=1,da2=2,e=3,f=4,g=1,h=8,j=3,s=0);
%update_r1(da1=2,da2=1,e=4,f=5,g=1,h=8,j=4,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=1,h=8,j=5,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=1,h=8,j=6,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=1,h=8,j=7,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=1,h=8,j=8,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=5,h=12,j=9,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=5,h=12,j=10,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=5,h=12,j=11,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=5,h=12,j=12,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=9,h=16,j=13,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=9,h=16,j=14,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=9,h=16,j=15,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=9,h=16,j=16,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=13,h=20,j=17,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=13,h=20,j=18,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=13,h=20,j=19,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=13,h=20,j=20,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=17,h=24,j=21,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=17,h=24,j=22,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=17,h=24,j=23,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=17,h=24,j=24,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=21,h=28,j=25,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=21,h=28,j=26,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=21,h=28,j=27,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=21,h=28,j=28,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=25,h=32,j=29,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=25,h=32,j=30,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=25,h=32,j=31,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=25,h=32,j=32,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=29,h=36,j=33,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=29,h=36,j=34,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=29,h=36,j=35,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=29,h=36,j=36,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=33,h=40,j=37,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=33,h=40,j=38,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=33,h=40,j=39,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=33,h=40,j=40,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=37,h=44,j=41,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=37,h=44,j=42,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=37,h=44,j=43,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=37,h=44,j=44,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=41,h=48,j=45,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=41,h=48,j=46,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=41,h=48,j=47,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=41,h=48,j=48,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=45,h=52,j=49,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=45,h=52,j=50,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=45,h=52,j=51,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=45,h=52,j=52,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=49,h=56,j=53,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=49,h=56,j=54,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=49,h=56,j=55,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=49,h=56,j=56,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=53,h=60,j=57,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=53,h=60,j=58,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=53,h=60,j=59,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=53,h=60,j=60,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=57,h=64,j=61,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=57,h=64,j=62,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=57,h=64,j=63,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=57,h=64,j=64,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=61,h=68,j=65,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=61,h=68,j=66,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=61,h=68,j=67,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=61,h=68,j=68,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=65,h=72,j=69,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=65,h=72,j=70,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=65,h=72,j=71,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=65,h=72,j=72,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=69,h=76,j=73,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=69,h=76,j=74,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=69,h=76,j=75,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=69,h=76,j=76,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=73,h=80,j=77,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=73,h=80,j=78,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=73,h=80,j=79,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=73,h=80,j=80,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=77,h=84,j=81,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=77,h=84,j=82,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=77,h=84,j=83,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=77,h=84,j=84,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=81,h=88,j=85,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=81,h=88,j=86,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=81,h=88,j=87,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=81,h=88,j=88,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=85,h=92,j=89,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=85,h=92,j=90,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=85,h=92,j=91,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=85,h=92,j=92,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=89,h=96,j=93,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=89,h=96,j=94,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=89,h=96,j=95,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=89,h=96,j=96,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=93,h=100,j=97,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=93,h=100,j=98,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=93,h=100,j=99,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=93,h=100,j=100,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=97,h=104,j=101,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=97,h=104,j=102,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=97,h=104,j=103,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=97,h=104,j=104,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=101,h=108,j=105,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=101,h=108,j=106,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=101,h=108,j=107,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=101,h=108,j=108,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=105,h=112,j=109,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=105,h=112,j=110,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=105,h=112,j=111,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=105,h=112,j=112,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=109,h=116,j=113,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=109,h=116,j=114,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=109,h=116,j=115,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=109,h=116,j=116,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=113,h=120,j=117,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=113,h=120,j=118,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=113,h=120,j=119,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=113,h=120,j=120,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=117,h=124,j=121,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=117,h=124,j=122,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=117,h=124,j=123,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=117,h=124,j=124,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=121,h=128,j=125,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=121,h=128,j=126,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=121,h=128,j=127,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=121,h=128,j=128,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=125,h=132,j=129,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=125,h=132,j=130,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=125,h=132,j=131,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=125,h=132,j=132,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=129,h=136,j=133,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=129,h=136,j=134,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=129,h=136,j=135,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=129,h=136,j=136,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=133,h=140,j=137,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=133,h=140,j=138,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=133,h=140,j=139,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=133,h=140,j=140,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=137,h=144,j=141,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=137,h=144,j=142,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=137,h=144,j=143,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=137,h=144,j=144,s=0);

%update_r1(da1=1,da2=2,e=5,f=6,g=141,h=148,j=145,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=141,h=148,j=146,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=141,h=148,j=147,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=141,h=148,j=148,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=145,h=152,j=149,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=145,h=152,j=150,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=145,h=152,j=151,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=145,h=152,j=152,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=149,h=156,j=153,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=149,h=156,j=154,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=149,h=156,j=155,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=149,h=156,j=156,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=153,h=160,j=157,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=153,h=160,j=158,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=153,h=160,j=159,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=153,h=160,j=160,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=157,h=164,j=161,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=157,h=164,j=162,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=157,h=164,j=163,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=157,h=164,j=164,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=161,h=168,j=165,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=161,h=168,j=166,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=161,h=168,j=167,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=161,h=168,j=168,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=165,h=172,j=169,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=165,h=172,j=170,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=165,h=172,j=171,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=165,h=172,j=172,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=169,h=176,j=173,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=169,h=176,j=174,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=169,h=176,j=175,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=169,h=176,j=176,s=0);
%update_r1(da1=1,da2=2,e=5,f=6,g=173,h=180,j=177,s=0);
%update_r1(da1=2,da2=1,e=6,f=7,g=173,h=180,j=178,s=0);
%update_r1(da1=1,da2=2,e=7,f=8,g=173,h=180,j=179,s=0);
%update_r1(da1=2,da2=1,e=8,f=9,g=173,h=180,j=180,s=0);


* ts1m: need more update statements ;
*JAS Feb24;
/*
Define macro run_update_r1 to run update_r1 multiple times
Inputs are:
start year (can be &caldate1 as defined in code above)
end year (can be relative to &year_interv as defined in code above)
option number (s)
*/
*dependent_on_time_step_length;

%macro run_update_r1(r1_start_year,r1_end_year,intervention_option);

%do ii = %sysevalf((1 + 4*(&r1_start_year-&caldate1))) %to %sysevalf((1 + 4*(&r1_end_year-&caldate1)));

%let year = %sysevalf(&caldate1 + 0.25*(&ii-1));
%let aa = %sysevalf(%sysfunc(mod(%sysevalf(&ii+1),2)) + 1);
%let bb = %sysevalf(3 - &aa);
%let ee = %sysfunc(min(&ii, %sysevalf(%sysfunc(mod(%sysevalf(&ii+3),4))+5)));
%let ff = %sysevalf(&ee + 1);
%let gg = %sysevalf(1 + %sysevalf(4*%sysfunc(ceil(%sysfunc(max(0,(%sysevalf(&year-&caldate1-1.75))))))) );
%let hh = %sysevalf(&gg + 7);
%let jj = ⅈ

%update_r1(da1=&aa, da2=&bb, e=&ee, f=&ff, g=&gg, h=&hh, j=&jj, y=&year, s=&intervention_option);

%end;

%mend;




*** RUN PROGRAM;

*1) Run from caldate1 to intervention year;
%run_update_r1(&caldate1,&year_interv-0.25,0);

* 2) Save dataset at this point;
data a ; set r1 ;
data r1 ; set a ;

* 3) Repetition 1;
%run_update_r1(&year_interv,&year_interv+50,0);

* 4) Repetition 2;
data r1; set a;
%run_update_r1(&year_interv,&year_interv+50,0);

* 5) Repetition 3;
data r1; set a;
%run_update_r1(&year_interv,&year_interv+50,0);




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