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19 Open 3 Closed
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Issues list

implement batching algorithm in Rust
#42 opened Dec 17, 2024 by dave-doty
@JoshPetrack @dave-doty
ppsim no longer works on Google Colab bug Something isn't working
#41 opened Feb 3, 2023 by EricESeverson
1
add configurable timeout when enumerating states enhancement New feature or request
#39 opened Dec 10, 2021 by dave-doty
detect if user specifies parameters in Simulation constructor and do not override if so enhancement New feature or request
#37 opened Dec 10, 2021 by dave-doty
give more useful error message when initial configuration contains invalid states enhancement New feature or request
#36 opened Dec 9, 2021 by dave-doty
Declare build dependency on Cython using pyproject.toml bug Something isn't working
#35 opened Dec 5, 2021 by mkoeppe
7
add pandas and numpy lower bound to requirements.txt bug Something isn't working
#34 opened Oct 4, 2021 by dave-doty
1
add example to README with transition probabilities documentation Improvements or additions to documentation
#33 opened Oct 4, 2021 by dave-doty
2
Import a CRN encoded in SBML format enhancement New feature or request
#32 opened Sep 23, 2021 by EricESeverson
add link to API in README documentation Improvements or additions to documentation
#31 opened Sep 3, 2021 by dave-doty
add link to paper at top of README documentation Improvements or additions to documentation
#30 opened Sep 3, 2021 by dave-doty
Use Strings internally instead of Specie objects enhancement New feature or request
#29 opened Jul 22, 2021 by EricESeverson
clean up type references in docstrings documentation Improvements or additions to documentation
#24 opened Jun 8, 2021 by dave-doty
1
Instantiation of Simulation with a function is needlessly slow
#17 opened Jun 2, 2021 by EricESeverson
add controllable random number seed for reproducible results enhancement New feature or request
#16 opened May 9, 2021 by dave-doty
1
support importing common CRN specification formats enhancement New feature or request
#14 opened May 6, 2021 by dave-doty
feature request: simulate large-state-count protocols enhancement New feature or request
#4 opened Apr 22, 2021 by dave-doty
1
make GitHub action for testing compiling API documentation enhancement New feature or request
#2 opened Apr 18, 2021 by dave-doty
make GitHub action for publishing Python package automatically to PyPI enhancement New feature or request
#1 opened Apr 18, 2021 by dave-doty
1
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