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Earl Grey v4.2.0

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@TobyBaril TobyBaril released this 29 Apr 15:05
· 120 commits to main since this release
v4.2.0
695a96a
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Learn about vigilant mode.
  • Removed inefficient for loop in final repeat merge step
  • updated overlap algorithm to handle nested insertions
  • new divergence calculator! This now works on the final merged repeats file and calculated kimura 2-parameter distance
  • new plots! new divergence calculator now produces new plots. Same idea - TE landscape, but now with two more plots showing landscapes by TE classifications for more indepth analyses.
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