Validate Hub Configuration #15
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| name: Validate Hub Configuration | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| validate-hub_config_job: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: checkout data repo | |
| uses: actions/checkout@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| repository: 'Testing-Forecast-Actions/ScenarioModellingHub' | |
| ref: 'main' | |
| path: './repo/' | |
| # TEST ONLY ----------------------------------- | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| install-r: false | |
| use-public-rspm: true | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libcurl4-openssl-dev libv8-dev libudunits2-dev libgdal-dev | |
| # install test dep | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| packages: Infectious-Disease-Modeling-Hubs/hubValidations, any::sessioninfo | |
| # - name: Install remotes | |
| # run: | | |
| # install.packages("remotes") | |
| # shell: Rscript {0} | |
| - name: Install dependencies | |
| run: | | |
| R -e 'remotes::install_github("Infectious-Disease-Modeling-Hubs/hubAdmin", ref = "feature/handle-samples")' | |
| # install.packages(c("arrow", "gh", "remotes")) | |
| # R -e 'Sys.setenv("NOT_CRAN" = TRUE) | |
| # Sys.unsetenv("NOT_CRAN") | |
| # remotes::install_url("https://github.com/midas-network/SMHvalidation/archive/refs/heads/main.zip") | |
| # remotes::install_url("https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/archive/refs/heads/main.zip")' | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # validate hub configurations | |
| - name: Run hub config validations | |
| run: | | |
| library("hubValidations") | |
| v <- hubAdmin::validate_hub_config(hub_path = "./repo", branch = "br-v3.0.0", schema_version = "latest") | |
| # v <- hubAdmin::validate_hub_config(hub_path = Sys.getenv("GITHUB_REPOSITORY"), branch = "br-v3.0.0", schema_version = "latest") | |
| # hubValidations::check_for_errors(v, verbose = TRUE) | |
| shell: Rscript {0} | |
| - name: trace | |
| run: echo "Validation completed" |