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updates for calrissian #75

updates for calrissian

updates for calrissian #75

Workflow file for this run

name: build
on:
push:
branches:
- master
- main
- bids23
paths:
# Only rebuild website when apps have changed
- 'water-bodies/**'
- .github/**
- docs/**
jobs:
validate:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- uses: actions/setup-python@v2
with:
python-version: 3.x
- run: pip install cwltool
- run: cwltool --validate cwl-workflow/app-water-bodies-cloud-native.cwl
- run: cwltool --validate cwl-workflow/app-water-body-cloud-native.cwl
- run: cwltool --validate cwl-workflow/app-water-body.cwl
version:
needs: validate
runs-on: ubuntu-latest
outputs:
app-version: ${{ steps.set-version.outputs.version }}
steps:
- uses: actions/checkout@v2
- run: echo "APP_VERSION=$(cat codemeta.json | jq -r .version )" >> $GITHUB_ENV
- run: echo app version is $APP_VERSION
- id: set-version
run: echo "::set-output name=version::$APP_VERSION"
container-build:
needs: version
runs-on: ubuntu-latest
strategy:
matrix:
step: [crop, norm_diff, otsu, stac, stage]
steps:
- uses: actions/checkout@v2
- run: echo version ${{needs.version.outputs.app-version}}
- run: echo "${{ secrets.GITHUB_TOKEN }}" | docker login ghcr.io -u ${{ github.actor }} --password-stdin
- name: build & push image
run: |
IMAGE_ID=ghcr.io/terradue/app-package-training-bids23/${{ matrix.step }}
docker build water-bodies/command-line-tools/${{ matrix.step }} --file water-bodies/command-line-tools/${{ matrix.step }}/Dockerfile --tag ${{ matrix.step }}
docker tag ${{ matrix.step }} $IMAGE_ID:${{needs.version.outputs.app-version}}
docker push $IMAGE_ID:${{needs.version.outputs.app-version}}
create-release:
needs:
- container-build
- version
runs-on: ubuntu-latest
outputs:
upload_url: ${{ steps.set-upload-url.outputs.upload_url }}
steps:
- name: release
uses: actions/create-release@v1
id: create_release
with:
draft: false
prerelease: false
release_name: ${{needs.version.outputs.app-version}}
tag_name: ${{needs.version.outputs.app-version}}
env:
GITHUB_TOKEN: ${{ github.token }}
- id: set-upload-url
run: echo "::set-output name=upload_url::${{ steps.create_release.outputs.upload_url }}"
publish-artifacts:
needs:
- create-release
- version
runs-on: ubuntu-latest
strategy:
matrix:
step: ["app-water-bodies-cloud-native", "app-water-body-cloud-native", "app-water-body"]
steps:
- uses: actions/checkout@v2
- run: |
for step in crop norm_diff otsu stac
do
tag="ghcr.io/terradue/app-package-training-bids23/${step}:${{needs.version.outputs.app-version}}"
docker pull ${tag}
shatag=$( docker inspect ${tag} | yq -r '.[0]["RepoDigests"][0]' )
for cwl in $(ls cwl-workflow/*.cwl)
do
s="${step}" t="${shatag}" yq -i eval '(.$graph[] | select (.id == env(s)) ).hints.DockerRequirement.dockerPull = env(t)' $cwl
done
done
- run: |
for cwl in $(ls cwl-workflow/*.cwl)
do
r=$( cat codemeta.json | jq -r ".codeRepository" ) yq -i eval '."s:codeRepository" = {"URL" : env(r)}' $cwl
v="${{needs.version.outputs.app-version}}" yq -i eval '."s:softwareVersion" = env(v)' $cwl
n=$(cat codemeta.json | jq -r '(.author[0].givenName + " " + .author[0].familyName)') \
e=$(cat codemeta.json | jq -r '.author[0].email') \
a=$(cat codemeta.json | jq -r '.author[0].affiliation["name"]') \
yq eval -i '."s:author" += [{"class": "s:Person", "s.name": env(n), "s.email": env(e), "s.affiliation": env(a)}]' $cwl
done
- run: |
mkdir downloads
for cwl in "app-water-bodies-cloud-native" "app-water-body-cloud-native" "app-water-body"
do
cp cwl-workflow/${cwl}.cwl downloads/${cwl}.${{needs.version.outputs.app-version}}.cwl
done
- uses: actions/upload-artifact@v2
with:
name: application-package
path: downloads
- name: upload linux artifact 1
uses: actions/upload-release-asset@v1
env:
GITHUB_TOKEN: ${{ github.token }}
with:
upload_url: ${{needs.create-release.outputs.upload_url}}
asset_path: downloads/${{matrix.step}}.${{needs.version.outputs.app-version}}.cwl
asset_name: ${{matrix.step}}.${{needs.version.outputs.app-version}}.cwl
asset_content_type: text/yaml