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@edkerk edkerk released this 13 Jun 22:02
· 293 commits to main since this release
v2.7.2
087c0c4
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Learn about vigilant mode.
  • feature
    • RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-Ons Explorer
    • ftINIT fast tINIT algorithm
    • contractModel removes _EXP_* suffixes if present in all duplicated reactions, as these reactions were derived from expandModel
    • findGeneDeletions gives optional grRatioMuts output, with the growth ratio of the mutant vs. wild-type
  • refactor
    • optimizeProb to match the new ftINIT function
    • remove MATLAB-git dependency in exportForGit
    • set solver as global variable for speed-up of multiple optimizeProb runs
  • fix
    • addMets accepts single compartment if it is the same for all metabolites (see ff462fd#r74565757)
    • expandModel adds _EXP_* suffixes to all expanded reactions, also the first one (it previously skipped _EXP_1)
    • removeGenes accepts numeric and logical input
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