v2.6.1

• fix
  • checkInstallation close version.txt after reading
  • keggRxns.mat & getRxnsFromKEGG empty subSystems in KEGG model should be cells, not strings
  • dispEM parse new line at end of error text
  • writeYaml correct indexing
  • .gitattributes specify mafft-linux64 as binary, to prevent EOL changes that can corrupt running it via WSL on Windows
  • exportModel: remove unnecessary warning regarding "absence of unconstrained metabolites" (= boundary metabolites). This is not problematic at all, and also very common for models
  • exportModel: remove useless note in SBML file about the file being exported from RAVEN. This was added to SBML files if no model.annotation field could be found, but it results in a warning in SBML Validator
  • addMets can take metNotes field
  • addRxns properly formats subSystems
  • changeGrRules does not try to add empty gene lists
• feat
  • getModelFromKEGG indicate progress during slowest step
  • new editMiriam function that can edit existing MIRIAM annotations, add new ones, replace, etc.
  • new miriamTests for the editMiriam and extractMiriam functions
• refactor
  • exportModel remove duplicate warning about missing objective function
  • getModelFromKEGG minor speed improvement
  • extractMiriam remove repetitive prefix (e.g. bigg.metabolite) from extractedMiriams output as it is always deleted after this function is called, while this info is also already in extractedMiriamNames