Back End Architecture

Servlets

HTTPServlets used to respond to REST endpoints.

Convert

Used to convert SBOL records to mxGraph, and mxGraph to SBOL records.

Data

Responds with the corresponding SBOL data needed. For instance possible role refinements of a sequence feature given the part role.

Echo

Used to generate Images from a graph, as the javascript mxGraph library doesn't have this functionality.

Enumerate

Used to generate an enumerated SBOL record from a combinatorial design.

Export

Used to convert a graph to a supported export format. (SBOL2, SBOL1, GenBank, GFF, Fasta)

SynBioHub

Any requests that interact with SynBioHub are in this servlet.

Data

Data containers that exist in the frontend such as glyphInfo, interactionInfo, etc...

Utils

Various classes used in Servlets. Most notably the MxToSBOL and SBOLToMx converters.