This repository details methods and data for the corresponding manuscript detailing hybridization in the M. arctoides genome and the role of hybridization in traits related to genital morphology.
A snapshot of the final version of this repository at the time of acceptance of our MS can be found on Zenodo 
Please cite the DOI above as well as the associated paper published in the journal Ecology and Evolution.
This project is based on whole genome sequencing of 13 samples across eight species of macaques. Two were sequenced as part of this project and raw fastq data for eleven additional samples were downloaded from NCBI. Raw read data from two sequenced samples have been deposited in NCBI sequence read archive (PRJNA622565). All samples were processed together through a single genome analysis pipeline.
| ID | species | species group | Coverage | NCBI Accession | Sex |
|---|---|---|---|---|---|
| Malaya | M. arctoides | arctoides | 20 | SRS6488501 | F |
| SM1 | M. arctoides | arctoides | 32 | SRR2981139 | F |
| SM2 | M. arctoides | arctoides | 19 | SRR2981140 | F |
| BGI-CE-4 | M. fascicularis | fascicularis | 43 | SRS114988 | F |
| CR-5 | M. mulatta | fascicularis | 44 | SRS115022 | F |
| BGI | M. mulatta | fascicularis | 10 | SRS212016 | M |
| BGI-96346 | M. mulatta | fascicularis | 4 | SRS114988 | M |
| A20 | M. assamensis | sinica | 13 | SRS6491954 | F |
| XH1 | M. assamensis | sinica | 49 | SRR2981114 | M |
| Tibetan-macaque-NO.3 | M. thibetana | sinica | 27 | SRR1024051 | F |
| PM664 | M. nemestrina | silenus | 40 | SRR5947292 | M |
| PF660 | M. nigra | silenus | 39 | SRR5947294 | F |
| PM592 | M. tonkeana | silenus | 38 | SRR5947293 | M |
See readme page here.
See readme page here.
See readme page here.
See readme page here.
See readme page here.
See readme page here.
See readme page here.