hr-environ-stoch-phd

This repo contains the work for my Ph.D. in Biology at UBC Okanagan.

• analysis contains all scripts used for analyses, including figure creation and model fitting. Scripts contain comments that explain the code, but they assume users have basic knowledge of R and that they will refer to help pages for packages and functions (which can be accessed with ?, e.g.: ?data.frame).
• data contains all datasets not publicly available elsewhere. Movement data can be downloaded through Movebank following the scripts in the analysis folder (also see https://github.com/StefanoMezzini/tapirs).
• figures contains all figures used in this thesis and any related presentations. The scripts used to create the figures can be found in the analysis/figures folder.
• functions contains all custom functions sourced in analysis scripts.
• issues contains all files related to issues with the thesis and repository. Please report any reproducibility issues as an issue on the repository.
• models contains all model saved as .rds files, except for models which are too large to store on GitHub. All models can be fit using the scripts in the analysis/models folder.
• talks contains all presentations and lectures given related to the thesis project. Scripts used to create the figures used can be found in the analysis/figures folder.
• writing contains all files used to create the documents related to the thesis project, including the proposal and the final thesis document. Related manuscripts are in separate repositories:
  • https://github.com/StefanoMezzini/env-var-review