Kaptive version 2.0.8

[erinyoung]

There's a new version of Kaptive!

I've actually been using the image created by @kapsakcj that's been in this PR : #694 . In theory, I should just add to that PR, but there's a new version of Kaptive, so I've made a new branch and new PR.

My apologies for any confusion that may arise from this.

I made a few adjustments from @stitam and @kapsakcj 's files:

• updated the base image to jammy (I tried to update blast, too, but that broke things)
• added biopython version
• changed the tests
• moved the vibrio files

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[erinyoung]

I think this PR probably
Closes #661
Closes #694

[kapsakcj]

thanks for the PR, I will aim to get this reviewed by the end of next week. Currently in the middle of moving so time is limited

[erinyoung]

@kapsakcj , when you get time, it'd be awesome if you could review this.

[kapsakcj]

thanks for the reminder, I'll take a look as soon as I have time

[kapsakcj]

I took a look at the GHActions workflow log here, which was triggered ~6 days ago and ran through the tests (i.e. it didn't use the cache): https://github.com/StaPH-B/docker-builds/actions/runs/7836200690/job/21383295535

everything ran as expected so I'm good to merge and deploy. I'll close PR #694

thank you for the PR and for your patience. Sorry it took me so long to review!

[kapsakcj]

deploy workflow here, it should be up on dockerhub and quay shortly: https://github.com/StaPH-B/docker-builds/actions/runs/7881702560