pygenomeviz version 0.4.2

[erinyoung]

There's a new version of pygenomeviz, but mostly I wanted to test out a new python-centric template for simple installations with pip.

Things that are new with this version:

• Using python:3.9.17-slim as a base instead of ubuntu:jammy
• Added CMD layer with all of the cli options
• Removed installation of wget, python3, and python3-pip from apt-get layer
• Added --no-cache-dir to the pip install layer

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[erinyoung]

@kapsakcj , this Dockerfile basically uses the new python3-centric template in #501. I would LOVE for you to be really nit-picky and hyper critical of this image. Any and all comments will be used to improve the template dockerfile.

[Kincekara]

This looks great! @kapsakcj, I will merge and deploy the container if you don't have additional recommendations.

[kapsakcj]

Thanks for reviewing! No other comments from me. Please go ahead w merging and deploying

I am curious to see how big the docker image is once it's on dockerhub

[erinyoung]

I would also like to know how big this image is. Turns out that matplotlib updated and broke pygenomeviz (see moshi4/pyGenomeViz#22). The newest version of pygenomeviz should have this fixed.