Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

adding parsnp version 2.1.2 #1151

Draft
wants to merge 1 commit into
base: master
Choose a base branch
from
Draft

Conversation

erinyoung
Copy link
Contributor

There's a new version of parsnp!

According to the release notes, there appears to be some bug fixes.

I copied the files from the prior version and updated the software ARG. It didn't look like any of the dependencies have been updated.

The full diff:

$ diff parsnp/2.0.5/Dockerfile parsnp/2.1.2/Dockerfile 
1c1
< ARG PARSNP_VER="2.0.5"
---
> ARG PARSNP_VER="2.1.2"
4c4
< FROM ubuntu:jammy as builder
---
> FROM ubuntu:jammy AS builder
94c94
< FROM ubuntu:jammy as app
---
> FROM ubuntu:jammy AS app
136c136
< FROM app as test
---
> FROM app AS test

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

@erinyoung
Copy link
Contributor Author

This built for me just fine, will set to draft until I can look into this error.

@erinyoung erinyoung marked this pull request as draft December 26, 2024 19:26
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant