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adds bbtools 39.13 w/ bugfix #1132

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merged 1 commit into from
Dec 18, 2024
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Kincekara
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bgzip causes an error in the bbduk process due to a missing library.

bgzip: error while loading shared libraries: libcurl-gnutls.so.4: cannot open shared object file: No such file or directory

I fixed the error by adding libcurl4-gnutls-dev while updating the tools. The rest of them are the same as the 39.10.

diff bbtools/39.10/ bbtools/39.13/
diff bbtools/39.10/Dockerfile bbtools/39.13/Dockerfile
11c11
< ARG BBTOOLSVER=39.10
---
> ARG BBTOOLSVER=39.13
32a33
>     libcurl4-gnutls-dev \

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
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@jessicarowell jessicarowell self-assigned this Dec 18, 2024
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Checked 39.10 vs. 39.13 - only difference is new version adds libcurl4-gnutls-dev.

@jessicarowell jessicarowell merged commit 9684e88 into StaPH-B:master Dec 18, 2024
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@Kincekara Kincekara deleted the bbtools branch December 19, 2024 13:28
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2 participants