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adding igv-reports version 1.12.0 #1117

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merged 1 commit into from
Dec 11, 2024

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erinyoung
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I've found IGV-reports to be very useful. I give it a vcf, bam file, and reference, and it'll create a mini-igv image for each variant in the bam file.

I've been using the biocontainers image, but thought one for staphb would be nice.

Screenshot 2024-12-09 134132

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
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@erinyoung
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Also, I forgot to mention that this image is smaller than biocontainers:

REPOSITORY                          TAG                    IMAGE ID       CREATED          SIZE
igverports                          app                    4cc61beee2c2   16 minutes ago   207MB
quay.io/biocontainers/igv-reports   1.14.1--pyh7e72e81_0   a6f93c61fbfe   2 months ago     246MB

@Kincekara
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This is a great tool! Thank you for adding it to the repo.

@Kincekara Kincekara merged commit 63acf1f into StaPH-B:master Dec 11, 2024
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@Kincekara
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2 participants