closes issues 1072 and 824 - referencing publications #1098
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
erinyoung
reviewed
Nov 12, 2024
| @@ -212,7 +212,7 @@ To learn more about the docker pull rate limits and the open source software pro | |||
| | [medaka](https://hub.docker.com/r/staphb/medaka) <br/> [](https://hub.docker.com/r/staphb/medaka) | <ul><li>[0.8.1](./medaka/0.8.1/)</li><li>[1.0.1](./medaka/1.0.1/)</li><li>[1.2.0](./medaka/1.2.0/)</li><li>[2.0.0](./medaka/2.0.0/)</li><li>[2.0.1](./medaka/2.0.1/)</li></ul> | https://github.com/nanoporetech/medaka | | |||
| | [metaphlan](https://hub.docker.com/r/staphb/metaphlan) <br/> [](https://hub.docker.com/r/staphb/metaphlan) | <ul><li>[3.0.3-no-db (no database)](./metaphlan/3.0.3-no-db/)</li><li> [3.0.3 (~3GB db)](./metaphlan/3.0.3/)</li><li>[4.1.0](./metaphlan/4.1.0/) (no database)</li><li>[4.1.1](./metaphlan/4.1.1/) (no database)</li></ul> | https://github.com/biobakery/MetaPhlAn | | |||
| | [MIDAS](https://hub.docker.com/r/staphb/midas) <br/> [](https://hub.docker.com/r/staphb/midas) | <ul><li>1.3.2 (no database)</li> | https://github.com/snayfach/MIDAS | | |||
| | [minimap2](https://hub.docker.com/r/staphb/minimap2) <br/> [](https://hub.docker.com/r/staphb/minimap2) | <ul><li>2.17</li><li>2.18</li><li>2.21</li><li>2.22</li><li>2.23</li><li>2.24</li><li>2.25</li><li>[2.26](./minimap2/2.26)</li><li>[2.27](./minimap2/2.27/)</li>li>[2.28](./minimap2/2.28/)</li></ul> | https://github.com/lh3/minimap2 | | |||
| | [minimap2](https://hub.docker.com/r/staphb/minimap2) <br/> [](https://hub.docker.com/r/staphb/minimap2) | <ul><li>2.17</li><li>2.18</li><li>2.21</li><li>2.22</li><li>2.23</li><li>2.24</li><li>2.25</li><li>[2.26](./minimap2/2.26)</li><li>[2.27](./minimap2/2.27/)</li><li>[2.28](./minimap2/2.28/)</li></ul> | https://github.com/lh3/minimap2 | | |||
There was a problem hiding this comment.
This wasn't in the description of the PR, but I can see the typo that is getting fixed.
erinyoung
approved these changes
Nov 12, 2024
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Closes #1072 and closes ##824
just adding links to publications for various database/models used in various docker images