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Pandoc isntalled via apt-get
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erinyoung authored Dec 4, 2023
1 parent 51cbfa9 commit d5dc1d1
Showing 1 changed file with 1 addition and 6 deletions.
7 changes: 1 addition & 6 deletions multiqc/1.18/Dockerfile
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FROM ubuntu:jammy as app

ARG MULTIQC_VER="1.18"
ARG PANDOC_VER="2.7.3"

# metadata
LABEL base.image="ubuntu:jammy"
Expand Down Expand Up @@ -32,13 +31,9 @@ RUN apt-get update && apt-get install -y \
# install multiqc
RUN pip3 install "multiqc==${MULTIQC_VER}"

# install pandoc
RUN wget https://github.com/jgm/pandoc/releases/download/${PANDOC_VER}/pandoc-${PANDOC_VER}-linux.tar.gz && \
tar -xvf pandoc-${PANDOC_VER}-linux.tar.gz && \
rm pandoc-${PANDOC_VER}-linux.tar.gz

# add pandoc to path
ENV PATH="/pandoc-${PANDOC_VER}/bin:${PATH}" \
ENV PATH="${PATH}" \
LC_ALL='C.UTF-8' LANG='C.UTF-8'

CMD multiqc --help
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