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README.md

meningotype container

Main tool: meningotype

Code repository: https://github.com/MDU-PHL/meningotype

Additional tools:

blast: 2.12.0+
isPCR: 33
mlst: 2.23.0
any2fasta: 0.4.2

Basic information on how to use this tool:

executable: meningotype
help: --help
version: --version
description: In silico typing for Neisseria meningitidis

Additional information: Documentation sometimes shows meningotype.py usage, but this is not in PATH. Please use meningotype.

Full documentation: https://github.com/MDU-PHL/meningotype

Example Usage

meningotype --finetype *fasta > results.txt