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meningotype container

Main tool: meningotype

Code repository: https://github.com/MDU-PHL/meningotype

Additional tools:

  • blast: 2.12.0+
  • isPCR: 33
  • mlst: 2.23.0
  • any2fasta: 0.4.2

Basic information on how to use this tool:

  • executable: meningotype
  • help: --help
  • version: --version
  • description: In silico typing for Neisseria meningitidis

Additional information: Documentation sometimes shows meningotype.py usage, but this is not in PATH. Please use meningotype.

Full documentation: https://github.com/MDU-PHL/meningotype

Example Usage

meningotype --finetype *fasta > results.txt