Moved notebooks to folder and updated config paths

SlicerIGT · Dec 3, 2024 · 02f460e · 02f460e
1 parent 01dea04
commit 02f460e
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Showing 13 changed files with 2 additions and 2 deletions.
diff --git a/...ation/RealtimeInferenceOverOpenIGTLink.py → ...rence/RealtimeInferenceOverOpenIGTLink.py b/...ation/RealtimeInferenceOverOpenIGTLink.py → ...rence/RealtimeInferenceOverOpenIGTLink.py
diff --git a/...soundSegmentation/scanconvert_config.yaml → ...mentation/configs/scanconvert_config.yaml b/...soundSegmentation/scanconvert_config.yaml → ...mentation/configs/scanconvert_config.yaml
diff --git a/UltrasoundSegmentation/extract_scanlines.py b/UltrasoundSegmentation/extract_scanlines.py
@@ -66,7 +66,7 @@ def main(args):
     # Read config file
 
     if args.scanconvert_config is None:
-        args.scanconvert_config = os.path.join(os.path.abspath(os.path.dirname(__file__)), "scanconvert_config.yaml")
+        args.scanconvert_config = os.path.join(os.path.abspath(os.path.dirname(__file__)), "configs", "scanconvert_config.yaml")
 
     with open(args.scanconvert_config, "r") as f:
         scanconvert_config = yaml.safe_load(f)

diff --git a/UltrasoundSegmentation/test_UNet.ipynb → ...undSegmentation/notebooks/test_UNet.ipynb b/UltrasoundSegmentation/test_UNet.ipynb → ...undSegmentation/notebooks/test_UNet.ipynb
diff --git a/UltrasoundSegmentation/test_datafiles.ipynb → ...gmentation/notebooks/test_datafiles.ipynb b/UltrasoundSegmentation/test_datafiles.ipynb → ...gmentation/notebooks/test_datafiles.ipynb
diff --git a/UltrasoundSegmentation/test_dataloader.ipynb → ...mentation/notebooks/test_dataloader.ipynb b/UltrasoundSegmentation/test_dataloader.ipynb → ...mentation/notebooks/test_dataloader.ipynb
diff --git a/...oundSegmentation/test_exported_data.ipynb → ...tation/notebooks/test_exported_data.ipynb b/...oundSegmentation/test_exported_data.ipynb → ...tation/notebooks/test_exported_data.ipynb
diff --git a/...undSegmentation/test_exported_model.ipynb → ...ation/notebooks/test_exported_model.ipynb b/...undSegmentation/test_exported_model.ipynb → ...ation/notebooks/test_exported_model.ipynb
diff --git a/...Segmentation/test_extract_scanlines.ipynb → ...on/notebooks/test_extract_scanlines.ipynb b/...Segmentation/test_extract_scanlines.ipynb → ...on/notebooks/test_extract_scanlines.ipynb
diff --git a/...soundSegmentation/test_prepare_data.ipynb → ...ntation/notebooks/test_prepare_data.ipynb b/...soundSegmentation/test_prepare_data.ipynb → ...ntation/notebooks/test_prepare_data.ipynb
diff --git a/...undSegmentation/test_scanconversion.ipynb → ...ation/notebooks/test_scanconversion.ipynb b/...undSegmentation/test_scanconversion.ipynb → ...ation/notebooks/test_scanconversion.ipynb
diff --git a/...dSegmentation/visualize_predictions.ipynb → ...ion/notebooks/visualize_predictions.ipynb b/...dSegmentation/visualize_predictions.ipynb → ...ion/notebooks/visualize_predictions.ipynb
diff --git a/UltrasoundSegmentation/prepare_data.py b/UltrasoundSegmentation/prepare_data.py
@@ -59,7 +59,7 @@
 # Read config file
 
 if args.config_file is None:
-    args.config_file = os.path.join(os.path.abspath(os.path.dirname(__file__)), "prepare_data_config.yaml")
+    args.config_file = os.path.join(os.path.abspath(os.path.dirname(__file__)), "configs", "prepare_data_config.yaml")
 
 logging.info(f"Reading configuration from {args.config_file}")