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Update to DelaunayTriangulation 1.0 (#53) #263

Update to DelaunayTriangulation 1.0 (#53)

Update to DelaunayTriangulation 1.0 (#53) #263

Re-run triggered May 11, 2024 10:20
Status Success
Total duration 33m 7s
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11 warnings and 1 notice
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L46
failed to run `@example` block in src/tutorials/piecewise_linear_and_natural_neighbour_interpolation_for_an_advection_diffusion_equation.md:123-139 ```@example piecewise_linear_and_natural_neighbour_interpolation_for_an_advection_diffusion_equation using CairoMakie fig = Figure(fontsize=38) for i in eachindex(sol) ax = Axis(fig[1, i], width=400, height=400, xlabel="x", ylabel="y", title="t = $(sol.t[i])", titlealign=:left) tricontourf!(ax, tri, sol.u[i], levels=0:0.00001:0.001, extendhigh=:auto, extendlow=:auto, colormap=:matter) tightlimits!(ax) ylims!(ax, -10, 10) end resize_to_layout!(fig) fig !DelaunayTriangulation.has_vertex(tri, i) && continue ``` exception = syntax: break or continue outside loop Stacktrace: [1] top-level scope @ piecewise_linear_and_natural_neighbour_interpolation_for_an_advection_diffusion_equation.md:138 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L46
failed to run `@example` block in src/tutorials/porous_medium_equation.md:79-95 ```@example porous_medium_equation # Step 5: Visualise using CairoMakie fig = Figure(fontsize=38) for (i, j) in zip(1:3, (1, 3, 5)) ax = Axis(fig[1, i], width=600, height=600, xlabel="x", ylabel="y", title="t = $(sol.t[j])", titlealign=:left) tricontourf!(ax, tri, sol.u[j], levels=0:0.005:0.05, colormap=:matter, extendhigh=:auto) tightlimits!(ax) end resize_to_layout!(fig) fig !DelaunayTriangulation.has_vertex(tri, i) && continue ``` exception = syntax: break or continue outside loop Stacktrace: [1] top-level scope @ porous_medium_equation.md:94 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L46
failed to run `@example` block in src/tutorials/reaction_diffusion_equation_with_a_time_dependent_dirichlet_boundary_condition_on_a_disk.md:77-91 ```@example reaction_diffusion_equation_with_a_time_dependent_dirichlet_boundary_condition_on_a_disk fig = Figure(fontsize=38) for (i, j) in zip(1:3, (1, 6, 11)) ax = Axis(fig[1, i], width=600, height=600, xlabel="x", ylabel="y", title="t = $(sol.t[j])", titlealign=:left) tricontourf!(ax, tri, sol.u[j], levels=1:0.01:1.4, colormap=:matter) tightlimits!(ax) end resize_to_layout!(fig) fig !DelaunayTriangulation.has_vertex(tri, i) && continue ``` exception = syntax: break or continue outside loop Stacktrace: [1] top-level scope @ reaction_diffusion_equation_with_a_time_dependent_dirichlet_boundary_condition_on_a_disk.md:90 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/utilities/utilities.jl#L46
failed to run `@example` block in src/wyos/diffusion_equations.md:399-421 ```@example diffusion_equations BCs_prob = BoundaryConditions(mesh, (x, y, t, u, p) -> -4, Neumann) fvm_prob = FVMProblem(mesh, BCs_prob; diffusion_function=let D = diffusion_function (x, y, t, u, p) -> D(x, y, p) end, initial_condition, final_time) fvm_sol = solve(fvm_prob, TRBDF2(linsolve=KLUFactorization()); saveat=100.0) fvm_sol |> tc #hide for j in eachindex(fvm_sol) ax = Axis(fig[2, j], width=600, height=600, xlabel="x", ylabel="y", title="t = $(fvm_sol.t[j])", titlealign=:left) u = j == 1 ? initial_condition : fvm_sol.u[j] tricontourf!(ax, tri, u, levels=0:0.1:1, colormap=:turbo, extendlow=:auto, extendhigh=:auto) tightlimits!(ax) end resize_to_layout!(fig) fig ``` exception = UndefVarError: `KLUFactorization` not defined Stacktrace: [1] top-level scope @ diffusion_equations.md:407 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/html/HTMLWriter.jl#L804
For 53 @example blocks, the 'text/html' representation of the resulting object is above the threshold (example_size_threshold: 8192 bytes). - 53 blocks had 'image/png' fallback image representation available, using that. On pages: math.md, tutorials/diffusion_equation_in_a_wedge_with_mixed_boundary_conditions.md, tutorials/diffusion_equation_on_a_square_plate.md, tutorials/diffusion_equation_on_an_annulus.md, tutorials/equilibrium_temperature_distribution_with_mixed_boundary_conditions_and_using_ensembleproblems.md, tutorials/helmholtz_equation_with_inhomogeneous_boundary_conditions.md, tutorials/laplaces_equation_with_internal_dirichlet_conditions.md, tutorials/mean_exit_time.md, tutorials/overview.md, tutorials/piecewise_linear_and_natural_neighbour_interpolation_for_an_advection_diffusion_equation.md, tutorials/porous_fisher_equation_and_travelling_waves.md, tutorials/porous_medium_equation.md, tutorials/reaction_diffusion_brusselator_system_of_pdes.md, tutorials/reaction_diffusion_equation_with_a_time_dependent_dirichlet_boundary_condition_on_a_disk.md, tutorials/solving_mazes_with_laplaces_equation.md, wyos/diffusion_equations.md, wyos/laplaces_equation.md, wyos/linear_reaction_diffusion_equations.md, wyos/mean_exit_time.md, wyos/poissons_equation.md
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/deploydocs.jl#L533
removing `stable` and linking `stable` to `v1.1.2`.
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/deploydocs.jl#L533
removing `v1.1` and linking `v1.1` to `v1.1.2`.
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/deploydocs.jl#L533
removing `v1.0` and linking `v1.0` to `v1.0.0`.
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/deploydocs.jl#L533
removing `v0.4` and linking `v0.4` to `v0.4.9`.
Documentation: ../../../.julia/packages/Documenter/CJeWX/src/deploydocs.jl#L533
removing `v0.3` and linking `v0.3` to `v0.3.6`.
Julia 1 - ubuntu-20.04 - x64 - push
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3, codecov/codecov-action@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
[julia-buildpkg] Caching of the julia depot was not detected
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`