[GEN-1026] Output annotation error report #544
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…n on annotation-tools
thomasyu888
reviewed
Jan 11, 2024
genie/process_mutation.py
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| ) | ||
| # Genome Nexus Jar file | ||
| syn.get( | ||
| "syn22084320", | ||
| ifcollision="overwrite.local", | ||
| downloadLocation=genie_config["genie_annotation_pkg"], | ||
| version=13, # TODO: This should pull from a config file in the future |
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@rxu17 I'd comment this out for now and just rely on the latest version until we are actually able to pull this from a config file.
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Purpose: Part of the ticket to allow for the output of the annotation error report.
This will add the new annotation-tools tag (once the annotation-tools PR gets merged and a new tag gets created) and the required java 11 update to the docker image in order to support the new
annotator.jarfile used as part of the GEN-1026 update.Testing:
Rebuilt docker container in ec2 instance and ran the process mutation files. Files ran successfully.
Depends on annotation-tools PR #8