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Sage-Bionetworks · Jul 9, 2024 · 34079a1 · 34079a1
1 parent f2c0f91
commit 34079a1
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Showing 2 changed files with 10 additions and 6 deletions.
diff --git a/genie/dashboard_table_updater.py b/genie/dashboard_table_updater.py
@@ -460,9 +460,9 @@ def update_sample_difference_table(syn, database_mappingdf):
         .applymap(int)
     )
 
-    diff_between_releasesdf[["Clinical", "Mutation", "CNV", "SEG", "Fusions"]] = (
-        new_values
-    )
+    diff_between_releasesdf[
+        ["Clinical", "Mutation", "CNV", "SEG", "Fusions"]
+    ] = new_values
 
     load._update_table(
         syn,

diff --git a/genie/input_to_database.py b/genie/input_to_database.py
@@ -806,8 +806,12 @@ def validation(
         syn=syn,
         input_valid_statusdf=validation_statusdf,
         invalid_errorsdf=error_trackingdf,
-        validation_status_table=syn.tableQuery(f"select * from syn61672246 where center = '{center}'"),
-        error_tracker_table=syn.tableQuery(f"select * from syn61672708 where center = '{center}'"),
+        validation_status_table=syn.tableQuery(
+            f"select * from syn61672246 where center = '{center}'"
+        ),
+        error_tracker_table=syn.tableQuery(
+            f"select * from syn61672708 where center = '{center}'"
+        ),
     )
     valid_filesdf = validation_statusdf.query('status == "VALIDATED"')
     return valid_filesdf[["id", "path", "fileType", "name"]]
@@ -890,7 +894,7 @@ def center_input_to_database(
         synid=center_input_synid,
         center=center,
         process=process,
-        downloadFile=(not only_validate)
+        downloadFile=(not only_validate),
     )
 
     # ancillary_files = get_ancillary_files(