Merge pull request #16 from SFB-ELAINE/collapse_VTA_fix

Collapse vta fix

ossdbs/api.py

@@ -250,19 +250,18 @@ def generate_point_models(settings: dict):
         dir_par = settings["PointModel"]["Lattice"]["Direction"]
         direction = dir_par["x[mm]"], dir_par["y[mm]"], dir_par["z[mm]"]
         distance = settings["PointModel"]["Lattice"]["PointDistance[mm]"]
+        collapse_vta = settings["PointModel"]["Lattice"]["CollapseVTA"]
 
         point_models.append(
             Lattice(
                 shape=shape,
                 center=center,
                 distance=distance,
                 direction=direction,
+                collapse_vta=collapse_vta,
             )
         )
 
-        collapse_vta = settings["PointModel"]["Lattice"]["CollapseVTA"]
-        point_models[-1].collapse_vta = collapse_vta
-
     if settings["PointModel"]["VoxelLattice"]["Active"]:
         _logger.info("from voxel lattice")
         center_par = settings["PointModel"]["Lattice"]["Center"]
@@ -441,7 +440,7 @@ def run_volume_conductor_model(settings, volume_conductor):
         point_models=point_models,
         activation_threshold=settings["ActivationThresholdVTA"],
         out_of_core=out_of_core,
-        export_frequency=export_frequency
+        export_frequency=export_frequency,
     )
     return vcm_timings