Server Submit & Setting Scripts

t3/settings/submit_zeus.py

@@ -0,0 +1,81 @@
+"""
+Submit scripts
+"""
+
+# Submission scripts stored as a dictionary with software as the primary key.
+submit_scripts = {
+#     'rmg': """#!/bin/bash -l
+# #SBATCH -J {name}
+# #SBATCH -t 05-00:00:00
+# #SBATCH -o out.txt
+# #SBATCH -e err.txt
+# #SBATCH --ntasks={cpus}
+# #SBATCH --mem-per-cpu={memory / cpus}
+#
+#
+# export PYTHONPATH=$PYTHONPATH:~/Code/RMG-Py/
+#
+# conda activate rmg_env
+#
+# touch initial_time
+#
+# python-jl ~/Code/RMG-Py/rmg.py -n {cpus} input.py{max_iterations}
+#
+# touch final_time
+#
+# """,
+#     'rmg': """Universe      = vanilla
+#
+# +JobName      = "{name}"
+#
+# log           = job.log
+# output        = out.txt
+# error         = err.txt
+#
+# getenv        = True
+#
+# should_transfer_files = no
+#
+# executable = job.sh
+#
+# request_cpus  = {cpus}
+# request_memory = {memory}MB
+#
+# queue
+#
+# """,
+#     'rmg_job': """#!/bin/bash -l
+#
+# touch initial_time
+#
+# source /srv01/technion/$USER/.bashrc
+#
+# conda activate rmg_env
+#
+# python-jl /Local/ce_dana/Code/RMG-Py/rmg.py -n {cpus} input.py{max_iterations}
+#
+# touch final_time
+# 
+# """,
+    'rmg': """#!/bin/bash -l
+
+#PBS -N {name}
+#PBS -q zeus_long_q
+#PBS -l walltime=168:00:00
+#PBS -l select=1:ncpus={cpus}
+#PBS -o out.txt
+#PBS -e err.txt
+
+PBS_O_WORKDIR={workdir}
+cd $PBS_O_WORKDIR
+
+conda activate rmg_env
+
+touch initial_time
+
+python-jl ~/Code/RMG-Py/rmg.py -n {cpus} input.py{max_iterations}
+
+touch final_time
+
+""",
+}