Upkeep (#384)

* Fix vignette titles

* Enable parallel testing

* Simplify matrixOps definition

DESCRIPTION

@@ -42,6 +42,8 @@ VignetteBuilder:
     knitr
 Config/Needs/website: sloop
 Config/testthat/edition: 3
+Config/testthat/parallel: TRUE
+Config/testthat/start-first: external-generic
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3

NAMESPACE

@@ -90,6 +90,7 @@ if (getRversion() >= "4.3.0") S3method(matrixOps, S7_object)
 if (getRversion() >= "4.3.0") S3method(nameOfClass, S7_class, S7_class_name)
 importFrom(stats,setNames)
 importFrom(utils,getFromNamespace)
+importFrom(utils,globalVariables)
 importFrom(utils,hasName)
 importFrom(utils,head)
 importFrom(utils,packageName)

R/S7-package.R

@@ -1,5 +1,6 @@
 ## usethis namespace: start
-#' @useDynLib S7, .registration = TRUE
+#' @importFrom utils globalVariables
 #' @importFrom utils head str hasName
+#' @useDynLib S7, .registration = TRUE
 ## usethis namespace: end
 NULL

R/method-ops.R

@@ -23,16 +23,16 @@ Ops.S7_object <- function(e1, e2) {
 chooseOpsMethod.S7_object <- function(x, y, mx, my, cl, reverse) TRUE
 
 #' @rawNamespace if (getRversion() >= "4.3.0") S3method(matrixOps, S7_object)
-matrixOps.S7_object <- NULL
+matrixOps.S7_object <- function(x, y) {
+  base_matrix_ops[[.Generic]](x, y)
+}
+
 
 on_load_define_matrixOps <- function() {
-  if (getRversion() >= "4.4.0") {
-    matrixOps.S7_object <<- function(x, y) {
-      base_matrix_ops[[.Generic]](x, y)
-    }
-  } else {
-    matrixOps.S7_object <<- function(e1, e2) {
-      base_matrix_ops[[.Generic]](e1, e2)
-    }
-  }
+  # if (getRversion() >= "4.3.0") {
+  # } else {
+  #   matrixOps.S7_object <<- function(e1, e2) {
+  #     base_matrix_ops[[.Generic]](e1, e2)
+  #   }
+  # }
 }

vignettes/classes-objects.Rmd

@@ -283,4 +283,3 @@ The first argument to `new_object()` should be an object of the `parent` class (
 That argument should be followed by one named argument for each property.
 
 There's one drawback of custom constructors that you should be aware of: any subclass will also require a custom constructor.
-

vignettes/generics-methods.Rmd

@@ -2,7 +2,7 @@
 title: "Generics and methods"
 output: rmarkdown::html_vignette
 vignette: >
-  %\VignetteIndexEntry{S7 generics and method dispatch}
+  %\VignetteIndexEntry{Generics and methods}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
 ---

vignettes/motivation.Rmd

@@ -63,12 +63,6 @@ library(S7)
     This made it possible to make radical changes but it made it harder to switch from S3 to S4, leading to a general lack of adoption in the R community.
     S7 is designed to be drop-in compatible with S3, making it possible to convert existing packages to use S7 instead of S3 with only an hour or two of work.
 
-```{=html}
 <!-- -->
-```
--   At least within Bioconductor, slots are generally thought of as implementation detail that should not be directly accessed by the end-user.
-    This leads to two problems.
-    Firstly, implementing an S4 Bioconductor class often also requires a plethora of accessor functions that are a thin wrapper around `@` or `@<-`.
-    Secondly, users know about `@` and use it to access object internals even though they're not supposed to.
-    S7 avoids these problems by accepting the fact that R is a data language, and that there's no way to stop users from pulling the data they need out of an object.
-    To make it possible to change the internal implementation details of an object while preserving existing `@` usage, S7 provides dynamic properties.
+
+-   At least within Bioconductor, slots are generally thought of as implementation detail that should not be directly accessed by the end-user. This leads to two problems. Firstly, implementing an S4 Bioconductor class often also requires a plethora of accessor functions that are a thin wrapper around `@` or `@<-`. Secondly, users know about `@` and use it to access object internals even though they're not supposed to. S7 avoids these problems by accepting the fact that R is a data language, and that there's no way to stop users from pulling the data they need out of an object. To make it possible to change the internal implementation details of an object while preserving existing `@` usage, S7 provides dynamic properties.

vignettes/packages.Rmd

@@ -2,7 +2,7 @@
 title: "Using S7 in a package"
 output: rmarkdown::html_vignette
 vignette: >
-  %\VignetteIndexEntry{packages}
+  %\VignetteIndexEntry{Using S7 in a package}
   %\VignetteEngine{knitr::rmarkdown}
   %\VignetteEncoding{UTF-8}
 ---