Make min and max work with MPIBlockVector when some blocks have size 0 #3549
Workflow file for this run
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| name: GitHub CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| inputs: | |
| git-ref: | |
| description: Git Hash (Optional) | |
| required: false | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| PYTHONWARNINGS: ignore::UserWarning | |
| PYTHON_CORE_PKGS: wheel | |
| PYPI_ONLY: z3-solver | |
| PYPY_EXCLUDE: scipy numdifftools seaborn statsmodels | |
| CACHE_VER: v221013.1 | |
| NEOS_EMAIL: [email protected] | |
| SRC_REF: ${{ github.head_ref || github.ref }} | |
| jobs: | |
| lint: | |
| name: lint/style-and-typos | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout Pyomo source | |
| uses: actions/checkout@v3 | |
| - name: Black Formatting Check | |
| run: | | |
| pip install black | |
| black . -S -C --check --diff --exclude examples/pyomobook/python-ch/BadIndent.py | |
| - name: Spell Check | |
| uses: crate-ci/typos@master | |
| with: | |
| config: ./.github/workflows/typos.toml | |
| build: | |
| name: ${{ matrix.TARGET }}/${{ matrix.python }}${{ matrix.other }} | |
| needs: lint # the linter job is a prerequisite for PRs | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python: [3.7, 3.8, 3.9, '3.10', '3.11'] | |
| other: [""] | |
| category: [""] | |
| include: | |
| - os: ubuntu-latest | |
| TARGET: linux | |
| PYENV: pip | |
| - os: macos-latest | |
| TARGET: osx | |
| PYENV: pip | |
| - os: windows-latest | |
| TARGET: win | |
| PYENV: conda | |
| PACKAGES: glpk | |
| - os: ubuntu-latest | |
| python: 3.9 | |
| other: /conda | |
| skip_doctest: 1 | |
| TARGET: linux | |
| PYENV: conda | |
| PACKAGES: | |
| - os: ubuntu-latest | |
| python: 3.8 | |
| other: /mpi | |
| mpi: 3 | |
| skip_doctest: 1 | |
| TARGET: linux | |
| PYENV: conda | |
| PACKAGES: mpi4py openmpi | |
| - os: ubuntu-latest | |
| python: 3.11 | |
| other: /singletest | |
| category: "-m 'neos or importtest'" | |
| skip_doctest: 1 | |
| TARGET: linux | |
| PYENV: pip | |
| - os: ubuntu-latest | |
| python: '3.10' | |
| other: /cython | |
| setup_options: --with-cython | |
| skip_doctest: 1 | |
| TARGET: linux | |
| PYENV: pip | |
| PACKAGES: cython | |
| - os: windows-latest | |
| python: 3.8 | |
| other: /pip | |
| skip_doctest: 1 | |
| TARGET: win | |
| PYENV: pip | |
| - os: ubuntu-latest | |
| python: 3.7 | |
| other: /slim | |
| slim: 1 | |
| skip_doctest: 1 | |
| TARGET: linux | |
| PYENV: pip | |
| - os: ubuntu-latest | |
| python: 3.8 | |
| other: /pyutilib | |
| TARGET: linux | |
| PYENV: pip | |
| PACKAGES: pyutilib | |
| - os: ubuntu-latest | |
| python: pypy-3.9 | |
| skip_doctest: 1 | |
| TARGET: linux | |
| PYENV: pip | |
| steps: | |
| - name: Checkout Pyomo source | |
| uses: actions/checkout@v3 | |
| - name: Configure job parameters | |
| run: | | |
| JOB="${{matrix.TARGET}}/${{matrix.python}}${{matrix.other}}" | |
| echo "GHA_JOBNAME=$JOB" | sed 's|/|_|g' >> $GITHUB_ENV | |
| if test -z "${{matrix.other}}"; then | |
| echo "GHA_JOBGROUP=${{matrix.TARGET}}" >> $GITHUB_ENV | |
| else | |
| echo "GHA_JOBGROUP=other" >> $GITHUB_ENV | |
| fi | |
| # Note: pandas 1.0.3 causes gams 29.1.0 import to fail in python 3.8 | |
| EXTRAS=tests | |
| if test -z "${{matrix.slim}}"; then | |
| EXTRAS="$EXTRAS,docs,optional" | |
| fi | |
| echo "EXTRAS=$EXTRAS" >> $GITHUB_ENV | |
| PYTHON_PACKAGES="${{matrix.PACKAGES}}" | |
| echo "PYTHON_PACKAGES=$PYTHON_PACKAGES" \ | |
| | tr '\n' ' ' | sed 's/ \+/ /g' >> $GITHUB_ENV | |
| # Ideally we would cache the conda downloads; however, each cache is | |
| # over 850MB, and with 5 python versions, that would consume 4.2 of | |
| # the 5 GB GitHub allows. | |
| # | |
| #- name: Conda package cache | |
| # uses: actions/cache@v3 | |
| # if: matrix.PYENV == 'conda' | |
| # id: conda-cache | |
| # with: | |
| # path: cache/conda | |
| # key: conda-${{env.CACHE_VER}}.0-${{runner.os}}-${{matrix.python}} | |
| #- name: Pip package cache | |
| # uses: actions/cache@v3 | |
| # if: matrix.PYENV == 'pip' | |
| # id: pip-cache | |
| # with: | |
| # path: cache/pip | |
| # key: pip-${{env.CACHE_VER}}.0-${{runner.os}}-${{matrix.python}} | |
| #- name: OS package cache | |
| # uses: actions/cache@v3 | |
| # if: matrix.TARGET != 'osx' | |
| # id: os-cache | |
| # with: | |
| # path: cache/os | |
| # key: pkg-${{env.CACHE_VER}}.0-${{runner.os}} | |
| - name: TPL package download cache | |
| uses: actions/cache@v3 | |
| if: ${{ ! matrix.slim }} | |
| id: download-cache | |
| with: | |
| path: cache/download | |
| key: download-${{env.CACHE_VER}}.0-${{runner.os}} | |
| - name: Configure curl | |
| run: | | |
| CURLRC="$(cat <<EOF | |
| retry = 0 | |
| max-time = 30 | |
| EOF | |
| )" | |
| echo "$CURLRC" > ${GITHUB_WORKSPACE}/.curlrc | |
| echo "$CURLRC" > ${GITHUB_WORKSPACE}/_curlrc | |
| echo "CURL_HOME=$GITHUB_WORKSPACE" >> $GITHUB_ENV | |
| - name: Update OSX | |
| if: matrix.TARGET == 'osx' | |
| run: | | |
| mkdir -p ${GITHUB_WORKSPACE}/cache/os | |
| export HOMEBREW_CACHE=${GITHUB_WORKSPACE}/cache/os | |
| # Be cautious running brew update: it can break | |
| # setup-python on OSX | |
| # brew update | |
| # | |
| # Notes: | |
| # - install glpk | |
| # - pyodbc needs: gcc pkg-config unixodbc freetds | |
| for pkg in bash pkg-config unixodbc freetds glpk; do | |
| brew list $pkg || brew install $pkg | |
| done | |
| - name: Update Linux | |
| if: matrix.TARGET == 'linux' | |
| run: | | |
| mkdir -p ${GITHUB_WORKSPACE}/cache/os | |
| # Notes: | |
| # - install glpk | |
| # - ipopt needs: libopenblas-dev gfortran liblapack-dev | |
| sudo apt-get -o Dir::Cache=${GITHUB_WORKSPACE}/cache/os \ | |
| install libopenblas-dev gfortran liblapack-dev glpk-utils | |
| sudo chmod -R 777 ${GITHUB_WORKSPACE}/cache/os | |
| - name: Update Windows | |
| if: matrix.TARGET == 'win' | |
| run: | | |
| echo "SETUPTOOLS_USE_DISTUTILS=local" >> $GITHUB_ENV | |
| - name: Set up Python ${{ matrix.python }} | |
| if: matrix.PYENV == 'pip' | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Set up Miniconda Python ${{ matrix.python }} | |
| if: matrix.PYENV == 'conda' | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python }} | |
| channels: conda-forge,gurobi,ibmdecisionoptimization,fico-xpress | |
| channel-priority: strict | |
| # GitHub actions is very fragile when it comes to setting up various | |
| # Python interpreters, expecially the setup-miniconda interface. | |
| # Per the setup-miniconda documentation, it is important to always | |
| # invoke bash as a login shell ('shell: bash -l {0}') so that the | |
| # conda environment is properly activated. However, running within | |
| # a login shell appears to foul up the link to python from | |
| # setup-python. Further, we have anecdotal evidence that | |
| # subprocesses invoked through $(python -c ...) and `python -c ...` | |
| # will not pick up the python activated by setup-python on OSX. | |
| # | |
| # Our solution is to define a PYTHON_EXE environment variable that | |
| # can be explicitly called within subprocess calls to reach the | |
| # correct interpreter. Note that we must explicitly run in a *non* | |
| # login shell to set up the environment variable for the | |
| # setup-python environments. | |
| - name: Install Python Packages (pip) | |
| if: matrix.PYENV == 'pip' | |
| shell: bash # DO NOT REMOVE: see note above | |
| run: | | |
| python -c 'import sys;print(sys.executable)' | |
| python -m pip install --cache-dir cache/pip --upgrade pip | |
| PYOMO_DEPENDENCIES=`python setup.py dependencies \ | |
| --extras "$EXTRAS" | tail -1` | |
| PACKAGES="${PYTHON_CORE_PKGS} ${PYTHON_PACKAGES} ${PYOMO_DEPENDENCIES} " | |
| if [[ ${{matrix.python}} == pypy* ]]; then | |
| EXCLUDE="$PYPY_EXCLUDE $EXCLUDE" | |
| fi | |
| EXCLUDE=`echo "$EXCLUDE" | xargs` | |
| if test -n "$EXCLUDE"; then | |
| for WORD in $EXCLUDE; do | |
| PACKAGES=${PACKAGES//$WORD / } | |
| done | |
| fi | |
| python -m pip install --cache-dir cache/pip ${PACKAGES} | |
| python -m pip install --cache-dir cache/pip pymysql || \ | |
| python -m pip install --cache-dir cache/pip pymysql | |
| if test -z "${{matrix.slim}}"; then | |
| python -m pip install --cache-dir cache/pip cplex docplex \ | |
| || echo "WARNING: CPLEX Community Edition is not available" | |
| python -m pip install --cache-dir cache/pip \ | |
| -i https://pypi.gurobi.com gurobipy \ | |
| || echo "WARNING: Gurobi is not available" | |
| python -m pip install --cache-dir cache/pip xpress \ | |
| || echo "WARNING: Xpress Community Edition is not available" | |
| fi | |
| python -c 'import sys; print("PYTHON_EXE=%s" \ | |
| % (sys.executable,))' >> $GITHUB_ENV | |
| echo "" | |
| echo "Final pip environment:" | |
| python -m pip list | sed 's/^/ /' | |
| - name: Install Python packages (conda) | |
| if: matrix.PYENV == 'conda' | |
| run: | | |
| # Set up environment | |
| mkdir -p $GITHUB_WORKSPACE/cache/conda | |
| conda config --set always_yes yes | |
| conda config --set auto_update_conda false | |
| conda config --prepend pkgs_dirs $GITHUB_WORKSPACE/cache/conda | |
| # Try to install mamba | |
| conda install -q -y -n base conda-libmamba-solver || MAMBA_FAILED=1 | |
| if test -z "$MAMBA_FAILED"; then | |
| echo "*** Activating the mamba environment solver ***" | |
| conda config --set solver libmamba | |
| fi | |
| # Print environment info | |
| echo "*** CONDA environment: ***" | |
| conda info | |
| conda config --show-sources | |
| conda config --show channels | |
| conda list --show-channel-urls | |
| which python | |
| python --version | |
| # Note: some pypi packages are not available through conda | |
| PYOMO_DEPENDENCIES=`python setup.py dependencies \ | |
| --extras "$EXTRAS" | tail -1` | |
| PACKAGES="${PYTHON_CORE_PKGS} ${PYTHON_PACKAGES} ${PYOMO_DEPENDENCIES} " | |
| if [[ ${{matrix.python}} == pypy* ]]; then | |
| EXCLUDE="$PYPY_EXCLUDE $EXCLUDE" | |
| fi | |
| # HACK: Remove problem packages on conda+Linux | |
| if test "${{matrix.TARGET}}" == linux; then | |
| EXCLUDE="casadi numdifftools pint $EXCLUDE" | |
| fi | |
| EXCLUDE=`echo "$EXCLUDE" | xargs` | |
| if test -n "$EXCLUDE"; then | |
| for WORD in $EXCLUDE; do | |
| PACKAGES=${PACKAGES//$WORD / } | |
| done | |
| fi | |
| for PKG in $PACKAGES; do | |
| if [[ " $PYPI_ONLY " == *" $PKG "* ]]; then | |
| PYPI_DEPENDENCIES="$PYPI_DEPENDENCIES $PKG" | |
| else | |
| CONDA_DEPENDENCIES="$CONDA_DEPENDENCIES $PKG" | |
| fi | |
| done | |
| echo "*** Install Pyomo dependencies ***" | |
| conda install -q -y $CONDA_DEPENDENCIES | |
| if test -z "${{matrix.slim}}"; then | |
| echo "*** Install CPLEX ***" | |
| conda install -q -y 'cplex>=12.10' docplex \ | |
| || echo "WARNING: CPLEX Community Edition is not available" | |
| echo "*** Install Gurobi ***" | |
| conda install -q -y gurobi \ | |
| || echo "WARNING: Gurobi is not available" | |
| echo "*** Install Xpress ***" | |
| conda install -q -y xpress \ | |
| || echo "WARNING: Xpress Community Edition is not available" | |
| for PKG in cyipopt pymumps scip; do | |
| echo "*** Install $PKG ***" | |
| conda install -q -y $PKG \ | |
| || echo "WARNING: $PKG is not available" | |
| done | |
| # TODO: This is a hack to stop test_qt.py from running until we | |
| # can better troubleshoot why it fails on GHA | |
| for QTPACKAGE in qt pyqt; do | |
| # Because conda is insane, removing packages can cause | |
| # unrelated packages to be updated (breaking version | |
| # specifications specified previously, e.g., in | |
| # setup.py). There doesn't appear to be a good | |
| # workaround, so we will just force-remove (recognizing | |
| # that it may break other conda cruft). | |
| conda remove --force-remove $QTPACKAGE \ | |
| || echo "$QTPACKAGE not in this environment" | |
| done | |
| fi | |
| # Re-try Pyomo (optional) dependencies with pip | |
| if test -n "$PYPI_DEPENDENCIES"; then | |
| python -m pip install --cache-dir cache/pip $PYPI_DEPENDENCIES | |
| fi | |
| # remember this python interpreter | |
| python -c 'import sys; print("PYTHON_EXE=%s" \ | |
| % (sys.executable,))' >> $GITHUB_ENV | |
| # | |
| # conda activate puts itself first in the PATH, which overrides | |
| # any paths we add through GITHUB_PATH. We will update .profile | |
| # to move the local runner paths back to the front (before conda). | |
| for profile in $HOME/.profile $HOME/.bash_profile; do | |
| if test ! -e $profile; then | |
| continue | |
| fi | |
| echo '' >> $profile | |
| echo 'export PATH=`echo "$PATH" \ | |
| | tr ":" "\\n" | grep runner | tr "\n" ":"`:`echo "$PATH" \ | |
| | tr ":" "\\n" | grep -v runner | tr "\n" ":"`' >> $profile | |
| done | |
| echo "" | |
| echo "Final conda environment:" | |
| conda list | sed 's/^/ /' | |
| - name: Setup TPL package directories | |
| run: | | |
| TPL_DIR="${GITHUB_WORKSPACE}/cache/tpl" | |
| mkdir -p "$TPL_DIR" | |
| DOWNLOAD_DIR="${GITHUB_WORKSPACE}/cache/download" | |
| mkdir -p "$DOWNLOAD_DIR" | |
| echo "TPL_DIR=$TPL_DIR" >> $GITHUB_ENV | |
| echo "DOWNLOAD_DIR=$DOWNLOAD_DIR" >> $GITHUB_ENV | |
| - name: Install Ipopt | |
| if: ${{ ! matrix.slim }} | |
| run: | | |
| IPOPT_DIR=$TPL_DIR/ipopt | |
| echo "$IPOPT_DIR" >> $GITHUB_PATH | |
| echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$IPOPT_DIR" >> $GITHUB_ENV | |
| mkdir -p $IPOPT_DIR | |
| IPOPT_TAR=${DOWNLOAD_DIR}/ipopt.tar.gz | |
| if test ! -e $IPOPT_TAR; then | |
| echo "...downloading Ipopt" | |
| if test "${{matrix.TARGET}}" == osx; then | |
| echo "IDAES Ipopt not available on OSX" | |
| exit 0 | |
| fi | |
| URL=https://github.com/IDAES/idaes-ext | |
| RELEASE=$(curl --max-time 150 --retry 8 \ | |
| -L -s -H 'Accept: application/json' ${URL}/releases/latest) | |
| VER=$(echo $RELEASE | sed -e 's/.*"tag_name":"\([^"]*\)".*/\1/') | |
| URL=${URL}/releases/download/$VER | |
| if test "${{matrix.TARGET}}" == linux; then | |
| curl --max-time 150 --retry 8 \ | |
| -L $URL/idaes-solvers-ubuntu2004-x86_64.tar.gz \ | |
| > $IPOPT_TAR | |
| else | |
| curl --max-time 150 --retry 8 \ | |
| -L $URL/idaes-solvers-windows-x86_64.tar.gz \ | |
| $URL/idaes-lib-windows-x86_64.tar.gz > $IPOPT_TAR | |
| fi | |
| fi | |
| cd $IPOPT_DIR | |
| tar -xzi < $IPOPT_TAR | |
| echo "" | |
| echo "$IPOPT_DIR" | |
| ls -l $IPOPT_DIR | |
| - name: Install GAMS | |
| if: ${{ ! matrix.slim }} | |
| # We install using Powershell because the GAMS installer hangs | |
| # when launched from bash on Windows | |
| shell: pwsh | |
| run: | | |
| $GAMS_DIR = "${env:TPL_DIR}/gams" | |
| echo "$GAMS_DIR" | ` | |
| Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| echo "LD_LIBRARY_PATH=${env:LD_LIBRARY_PATH}:$GAMS_DIR" ` | |
| Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| echo "DYLD_LIBRARY_PATH=${env:DYLD_LIBRARY_PATH}:$GAMS_DIR" ` | |
| Out-File -FilePath $env:GITHUB_ENV -Encoding utf8 -Append | |
| $INSTALLER = "${env:DOWNLOAD_DIR}/gams_install.exe" | |
| # We are pinning to 29.1.0 because a license is required for | |
| # versions after this in order to run in demo mode. | |
| $URL = "https://d37drm4t2jghv5.cloudfront.net/distributions/29.1.0" | |
| if ( "${{matrix.TARGET}}" -eq "win" ) { | |
| $URL = "$URL/windows/windows_x64_64.exe" | |
| } elseif ( "${{matrix.TARGET}}" -eq "osx" ) { | |
| $URL = "$URL/macosx/osx_x64_64_sfx.exe" | |
| } else { | |
| $URL = "$URL/linux/linux_x64_64_sfx.exe" | |
| } | |
| if (-not (Test-Path "$INSTALLER" -PathType Leaf)) { | |
| echo "...downloading GAMS" | |
| Invoke-WebRequest -Uri "$URL" -OutFile "$INSTALLER" ` | |
| -RetryIntervalSec 30 -MaximumRetryCount 8 -TimeoutSec 150 | |
| } | |
| echo "...installing GAMS" | |
| if ( "${{matrix.TARGET}}" -eq "win" ) { | |
| Start-Process -FilePath "$INSTALLER" -ArgumentList ` | |
| "/SP- /NORESTART /VERYSILENT /DIR=$GAMS_DIR /NOICONS" ` | |
| -Wait | |
| } else { | |
| chmod 777 $INSTALLER | |
| Start-Process -FilePath "$INSTALLER" -ArgumentList ` | |
| "-q -d $GAMS_DIR" -Wait | |
| mv $GAMS_DIR/*/* $GAMS_DIR/. | |
| } | |
| echo "" | |
| echo "$GAMS_DIR" | |
| ls -l $GAMS_DIR | |
| - name: Install GAMS Python bindings | |
| if: ${{ ! matrix.slim }} | |
| run: | | |
| GAMS_DIR="${env:TPL_DIR}/gams" | |
| py_ver=$($PYTHON_EXE -c 'import sys;v="_%s%s" % sys.version_info[:2] \ | |
| ;print(v if v != "_27" else "")') | |
| if test -e $GAMS_DIR/apifiles/Python/api$py_ver; then | |
| echo "Installing GAMS Python bindings" | |
| pushd $GAMS_DIR/apifiles/Python/api$py_ver | |
| $PYTHON_EXE setup.py install | |
| popd | |
| fi | |
| - name: Install BARON | |
| if: ${{ ! matrix.slim }} | |
| shell: pwsh | |
| run: | | |
| $BARON_DIR = "${env:TPL_DIR}/baron" | |
| echo "$BARON_DIR" | ` | |
| Out-File -FilePath $env:GITHUB_PATH -Encoding utf8 -Append | |
| $URL = "https://www.minlp.com/downloads/xecs/baron/current/" | |
| if ( "${{matrix.TARGET}}" -eq "win" ) { | |
| $INSTALLER = "${env:DOWNLOAD_DIR}/baron_install.exe" | |
| $URL += "baron-win64.exe" | |
| } elseif ( "${{matrix.TARGET}}" -eq "osx" ) { | |
| $INSTALLER = "${env:DOWNLOAD_DIR}/baron_install.zip" | |
| $URL += "baron-osx64.zip" | |
| } else { | |
| $INSTALLER = "${env:DOWNLOAD_DIR}/baron_install.zip" | |
| $URL += "baron-lin64.zip" | |
| } | |
| if (-not (Test-Path "$INSTALLER" -PathType Leaf)) { | |
| echo "...downloading BARON ($URL)" | |
| Invoke-WebRequest -Uri "$URL" -OutFile "$INSTALLER" ` | |
| -RetryIntervalSec 30 -MaximumRetryCount 8 -TimeoutSec 150 | |
| } | |
| echo "...installing BARON" | |
| if ( "${{matrix.TARGET}}" -eq "win" ) { | |
| Start-Process -FilePath "$INSTALLER" -ArgumentList ` | |
| "/SP- /NORESTART /VERYSILENT /DIR=$BARON_DIR /NOICONS" ` | |
| -Wait | |
| } else { | |
| unzip -q $INSTALLER | |
| mv baron-* $BARON_DIR | |
| } | |
| echo "" | |
| echo "$BARON_DIR" | |
| ls -l $BARON_DIR | |
| - name: Install GJH_ASL_JSON | |
| if: ${{ ! matrix.slim && matrix.TARGET != 'win' }} | |
| run: | | |
| GJH_DIR="$TPL_DIR/gjh" | |
| echo "${GJH_DIR}" >> $GITHUB_PATH | |
| INSTALL_DIR="${DOWNLOAD_DIR}/gjh" | |
| if test ! -e "$INSTALL_DIR/bin"; then | |
| mkdir -p "$INSTALL_DIR" | |
| INSTALLER="$INSTALL_DIR/gjh_asl_json.zip" | |
| URL="https://codeload.github.com/ghackebeil/gjh_asl_json/zip/master" | |
| curl --max-time 150 --retry 8 -L $URL > $INSTALLER | |
| cd $INSTALL_DIR | |
| unzip -q $INSTALLER | |
| cd gjh_asl_json-master/Thirdparty | |
| ./get.ASL | |
| cd .. | |
| make | |
| mv bin "$INSTALL_DIR/bin" | |
| fi | |
| cp -rp "$INSTALL_DIR/bin" "$GJH_DIR" | |
| echo "" | |
| echo "$GJH_DIR" | |
| ls -l $GJH_DIR | |
| - name: Install Pyomo | |
| run: | | |
| echo "" | |
| echo "Clone Pyomo-model-libraries..." | |
| URL=https://github.com/Pyomo/pyomo-model-libraries.git | |
| git clone -b ${SRC_REF##*/} $URL || git clone -b main $URL | |
| echo "" | |
| echo "Install Pyomo..." | |
| echo "" | |
| $PYTHON_EXE setup.py develop ${{matrix.setup_options}} | |
| echo "" | |
| echo "Set custom PYOMO_CONFIG_DIR" | |
| echo "" | |
| echo "PYOMO_CONFIG_DIR=${GITHUB_WORKSPACE}/config" >> $GITHUB_ENV | |
| # this has to be done after Pyomo is installed because highspy | |
| # depends on pyomo's find_library function | |
| - name: Install HiGHS | |
| if: ${{ ! matrix.slim }} | |
| shell: bash | |
| run: | | |
| $PYTHON_EXE -m pip install --cache-dir cache/pip highspy \ | |
| || echo "WARNING: highspy is not available" | |
| - name: Set up coverage tracking | |
| run: | | |
| if test "${{matrix.TARGET}}" == win; then | |
| COVERAGE_BASE=${GITHUB_WORKSPACE}\\.cover | |
| else | |
| COVERAGE_BASE=${GITHUB_WORKSPACE}/.cover | |
| fi | |
| COVERAGE_RC=${COVERAGE_BASE}_rc | |
| echo "COVERAGE_RCFILE=$COVERAGE_RC" >> $GITHUB_ENV | |
| echo "COVERAGE_PROCESS_START=$COVERAGE_RC" >> $GITHUB_ENV | |
| cp ${GITHUB_WORKSPACE}/.coveragerc ${COVERAGE_RC} | |
| echo "data_file=${COVERAGE_BASE}age" >> ${COVERAGE_RC} | |
| SITE_PACKAGES=$($PYTHON_EXE -c "from distutils.sysconfig import \ | |
| get_python_lib; print(get_python_lib())") | |
| echo "Python site-packages: $SITE_PACKAGES" | |
| echo 'import coverage; coverage.process_startup()' \ | |
| > ${SITE_PACKAGES}/run_coverage_at_startup.pth | |
| - name: Download and install extensions | |
| if: ${{ ! matrix.slim }} | |
| run: | | |
| echo "" | |
| echo "Pyomo download-extensions" | |
| echo "" | |
| pyomo download-extensions || exit 1 | |
| echo "" | |
| echo "Pyomo build-extensions" | |
| echo "" | |
| pyomo build-extensions --parallel 2 | |
| - name: Report pyomo plugin information | |
| run: | | |
| echo "$PATH" | |
| pyomo help --solvers || exit 1 | |
| pyomo help --transformations || exit 1 | |
| pyomo help --writers || exit 1 | |
| - name: Run Pyomo tests | |
| if: matrix.mpi == 0 | |
| run: | | |
| $PYTHON_EXE -m pytest -v \ | |
| -W ignore::Warning ${{matrix.category}} \ | |
| pyomo `pwd`/pyomo-model-libraries \ | |
| `pwd`/examples/pyomobook --junitxml="TEST-pyomo.xml" | |
| - name: Run Pyomo MPI tests | |
| if: matrix.mpi != 0 | |
| run: | | |
| # Manually invoke the DAT parser so that parse_table_datacmds.py | |
| # is fully generated by a single process before invoking MPI | |
| $PYTHON_EXE -c "from pyomo.dataportal.parse_datacmds import \ | |
| parse_data_commands; parse_data_commands(data='')" | |
| mpirun -np ${{matrix.mpi}} --oversubscribe pytest -v \ | |
| --junit-xml=TEST-pyomo-mpi.xml \ | |
| -m "mpi" -W ignore::Warning \ | |
| pyomo `pwd`/pyomo-model-libraries | |
| - name: Run documentation tests | |
| if: matrix.skip_doctest == 0 | |
| run: | | |
| make -C doc/OnlineDocs doctest -d | |
| - name: Process code coverage report | |
| run: | | |
| coverage combine | |
| coverage report -i | |
| coverage xml -i | |
| - name: Record build artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ${{github.job}}_${{env.GHA_JOBGROUP}}-${{env.GHA_JOBNAME}} | |
| path: | | |
| .coverage | |
| coverage.xml | |
| # In general, do not record test results as artifacts to | |
| # manage total artifact storage | |
| # TEST-*.xml | |
| bare-python-env: | |
| name: linux/3.8/bare-env | |
| needs: lint # the linter job is a prerequisite for PRs | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| steps: | |
| - name: Checkout Pyomo source | |
| uses: actions/checkout@v3 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Pyomo | |
| run: | | |
| echo "" | |
| echo "Install Pyomo..." | |
| echo "" | |
| python setup.py develop | |
| echo "" | |
| echo "Set custom PYOMO_CONFIG_DIR" | |
| echo "" | |
| echo "PYOMO_CONFIG_DIR=${GITHUB_WORKSPACE}/config" >> $GITHUB_ENV | |
| - name: Report pyomo plugin information | |
| run: | | |
| echo "$PATH" | |
| pyomo help --solvers || exit 1 | |
| pyomo help --transformations || exit 1 | |
| pyomo help --writers || exit 1 | |
| - name: Run Pyomo standalone test | |
| run: | | |
| echo "" | |
| echo "Running standalone Pyomo test" | |
| echo "" | |
| python `pwd`/pyomo/environ/tests/standalone_minimal_pyomo_driver.py \ | |
| || exit 1 | |
| cover: | |
| name: process-coverage-${{ matrix.TARGET }} | |
| needs: build | |
| if: always() # run even if a build job fails | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 10 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| include: | |
| - os: ubuntu-latest | |
| TARGET: linux | |
| - os: macos-latest | |
| TARGET: osx | |
| - os: windows-latest | |
| TARGET: win | |
| steps: | |
| - name: Checkout Pyomo source | |
| uses: actions/checkout@v3 | |
| # We need the source for .codecov.yml and running "coverage xml" | |
| #- name: Pip package cache | |
| # uses: actions/cache@v3 | |
| # id: pip-cache | |
| # with: | |
| # path: cache/pip | |
| # key: pip-${{env.CACHE_VER}}.0-${{runner.os}}-3.8 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: artifacts | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Python Packages (pip) | |
| shell: bash # DO NOT REMOVE: see note above | |
| run: | | |
| python -c 'import sys;print(sys.executable)' | |
| python -m pip install --cache-dir cache/pip --upgrade pip | |
| PYOMO_DEPENDENCIES=`python setup.py dependencies \ | |
| --extras "tests" | tail -1` | |
| python -m pip install --cache-dir cache/pip \ | |
| ${PYTHON_CORE_PKGS} ${PYOMO_DEPENDENCIES} | |
| python -c 'import sys; print("PYTHON_EXE=%s" \ | |
| % (sys.executable,))' >> $GITHUB_ENV | |
| - name: Install Pyomo | |
| run: | | |
| echo "" | |
| echo "Clone Pyomo-model-libraries..." | |
| git clone https://github.com/Pyomo/pyomo-model-libraries.git | |
| echo "" | |
| echo "Install Pyomo..." | |
| echo "" | |
| $PYTHON_EXE setup.py develop ${{matrix.setup_options}} | |
| echo "" | |
| echo "Set custom PYOMO_CONFIG_DIR" | |
| echo "" | |
| echo "PYOMO_CONFIG_DIR=${GITHUB_WORKSPACE}/config" >> $GITHUB_ENV | |
| - name: Generate parse_table_datacmds | |
| run: | | |
| # Manually invoke the DAT parser so that parse_table_datacmds.py | |
| # is generated before running "coverage xml" | |
| $PYTHON_EXE -c "from pyomo.dataportal.parse_datacmds import \ | |
| parse_data_commands; parse_data_commands(data='')" | |
| - name: Update codecov uploader | |
| run: | | |
| set +e | |
| CODECOV="${GITHUB_WORKSPACE}/codecov.sh" | |
| echo "CODECOV=$CODECOV" >> $GITHUB_ENV | |
| for i in `seq 3`; do | |
| echo "Downloading current codecov script (attempt ${i})" | |
| curl -L https://codecov.io/bash -o $CODECOV | |
| if test $? == 0; then | |
| break | |
| fi | |
| DELAY=$(( RANDOM % 30 + 30)) | |
| echo "Pausing $DELAY seconds before re-attempting download" | |
| sleep $DELAY | |
| done | |
| if test ! -e $CODECOV; then | |
| echo "Failed to download codecov.sh" | |
| exit 1 | |
| fi | |
| - name: Combine coverage reports | |
| if: github.repository_owner == 'Pyomo' || github.ref != 'refs/heads/main' | |
| run: | | |
| set +e | |
| if [ "$GITHUB_EVENT_NAME" == "pull_request" ]; then | |
| SHA=$(jq --raw-output .pull_request.head.sha "$GITHUB_EVENT_PATH") | |
| else | |
| SHA=$GITHUB_SHA | |
| fi | |
| for ARTIFACT in artifacts/*_*${{matrix.TARGET}}_*; do | |
| NAME=`echo $ARTIFACT | cut -d/ -f2` | |
| cp -v $ARTIFACT/.coverage .coverage-$NAME | |
| done | |
| rm -vf .coverage coverage.xml | |
| echo "Build: ${{ matrix.TARGET }}/other" | |
| echo "" | |
| FILES=.coverage-*_other-* | |
| coverage combine --debug=dataio $FILES | |
| if test ! -e .coverage; then | |
| echo "No coverage to upload." | |
| else | |
| coverage xml || coverage xml -i | |
| mv -v coverage.xml coverage-other.xml | |
| fi | |
| echo "" | |
| echo "Build: ${{ matrix.TARGET }}" | |
| echo "" | |
| FILES=.coverage-*_${{matrix.TARGET}}-* | |
| coverage combine --debug=dataio $FILES | |
| rm -vf artifacts/*/*.xml | |
| if test ! -e .coverage; then | |
| echo "No coverage to upload." | |
| else | |
| coverage xml || coverage xml -i | |
| fi | |
| - name: Upload codecov reports | |
| if: github.repository_owner == 'Pyomo' || github.ref != 'refs/heads/main' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: coverage.xml | |
| token: ${{ secrets.PYOMO_CODECOV_TOKEN }} | |
| name: ${{ matrix.TARGET }} | |
| flags: ${{ matrix.TARGET }} | |
| fail_ci_if_error: true | |
| - name: Upload other coverage reports | |
| if: | | |
| hashFiles('coverage-other.xml') != '' && | |
| (github.repository_owner == 'Pyomo' || github.ref != 'refs/heads/main') | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: coverage-other.xml | |
| token: ${{ secrets.PYOMO_CODECOV_TOKEN }} | |
| name: ${{ matrix.TARGET }}/other | |
| flags: ${{ matrix.TARGET }},other | |
| fail_ci_if_error: true |