quick fix

Psy-Fer · Dec 3, 2019 · ca5d117 · ca5d117
1 parent d50c36a
commit ca5d117
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/README.md b/README.md
@@ -58,7 +58,7 @@ pip3 install Keras tensorflow-gpu Pandas PyTs Scikit-learn numba==0.45.0 -->
 
 ## Running the software
 
-    python3 deeplexicon.py -p ~/top/fast5/path/ -f multi -m model/pAmps-rep2-4-train1_newdata_nanopore_UResNet20v2_model.039.h5 > output.tsv
+    python3 deeplexicon.py -p ~/top/fast5/path/ -f multi -m model/pAmps-final-actrun_newdata_nanopore_UResNet20v2_model.030.h5 > output.tsv
 
 
 Please note, the current algorithm has been trained to demultiplex the 4 barcodes shown above. It will not accurately demultiplex reads if different sequences are used.

diff --git a/deeplexicon.py b/deeplexicon.py
@@ -264,7 +264,7 @@ def main():
                             cm = round(float(c), 4)
                             if args.verbose:
                                 print_verbose("cm is: {}".format(cm))
-                            print("{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}".format(fast5s[readID], readID, barcde_out[out], cm, prob[0], prob[1], prob[2], prob[3]))
+                            print("{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}".format(fast5s[readID], readID, barcode_out[out], cm, prob[0], prob[1], prob[2], prob[3]))
                         labels = []
                         images = []
                         fast5s = {}
@@ -307,7 +307,7 @@ def main():
         cm = round(float(c), 4)
         if args.verbose:
             print_verbose("cm is: {}".format(cm))
-        print("{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}".format(fast5s[readID], readID, barcde_out[out], cm, prob[0], prob[1], prob[2], prob[3]))
+        print("{}\t{}\t{}\t{}\t{}\t{}\t{}\t{}".format(fast5s[readID], readID, barcode_out[out], cm, prob[0], prob[1], prob[2], prob[3]))
     labels = []
     images = []
     fast5s = {}