ProteinDF_bridge -- bridge scripts the ProteinDF package and other data/package

What you need to use ProteinDF_bridge

• Python 2.x or later (recommended: above 3.6)
• Python modules
  • setuptools
  • numpy
  • argparse
  • PyYaml
  • msgpack-python, u-msgpack-python or msgpack-pure
  • configparser
  • ordereddict (for Python 2.6)

How to install ProteinDF_bridge

get source files

Clone a copy of the main ProteinDF_bridge git repo by running:

git clone git://github.com/ProteinDF/ProteinDF_bridge.git

install ProteinDF_bridge module using the standard venv module (recommended)

• required above Python 3.3

confirm install directory

Here, we will assume that the virtual environment of Python will be installed in the directory specified by the environment variable PDF_HOME. Set the environment variables according to the shell you are using.

The following shows how to set them in bash:

$ export PDF_HOME=${HOME}/local/ProteinDF

prepare standard virtual environment of Python

The following shows how to set them in bash:

$ python -m venv ${PDF_HOME}
$ source ${PDF_HOME}/bin/activate

install module

Enter the source directory and run build script:

$ cd ProteinDF_bridge
$ pip install --use-feature=in-tree-build .

Documents

sorry, in preparation.

License

ProteinDF_bridge is licensed under the GNU GPL v3. The source code can be found on the Github.

Bugs

If you find any bugs, please let me know. And if you have a suggestion for improvement, please let me know.