April 12, 2022 (Dev Meeting)

Agenda:

#	Owner	Title	Time (min)
1	Sachi, David	Update on MONAI Label	10
2	Behrooz	MONAI whole slide image reading: #4107	10
3	All	MONAI Patch Datasets, related topics #4090, #3608, #4099	20
4	All	How to contribute	20

Attendees:

• MONAI Label Pathology: Sachi, David, Andres
• MONAI Pathology: Lee, Shan, Jeff, Johnny, Ziyue, Fernando, Behrooz
• CuCIM: Gigon, Michael
• Other MONAI WGs: Stephen

People who can review:

• Lee
• Shan
• Stephen (not pathology)
• Jonny
• Ziyue
• Behrooz

Notes

MONAI Label:

• David, have all set up in local env and querying what training model is available to populate DSA
• Sachi, improving performance in MONAI label
• Sachi, working on quPath connectivity (should have it by next week)

WSIReader:

• For microscopy we have 10s of channels or one channel
• region vs patch?

Types of input annotation data:

• image paths, level, size
• image paths, level, location, size

Patch Dataset requirements:

Action items:

PIC	Item
Sachi	finishing quPath integration
Sachi	implement nuClick in MONAI Label
David	streamline the interface between DSA and MONAI Label
Gigon	adding single channel support in CuCIM
Behrooz	Finalize WSIReader